Detailed information on CNT30402584


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FJH0|RAA1F_ARATH, E-value = 1e-139

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30378531Beta vulgarisArabidopsis thaliana18.6945.5884.82191forward
CNT30215813Beta vulgarisHelianthus annuus48.1443.4278.46492forward
CNT30646562Beta vulgarisCannabis sativa18.7926.1681.25192forward

Expression of CNT30402584

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MEGLFGFFLFLYIFWRERERGGKVEMENL*

>peptide 2 (38 aa)
MNATSSKFNADCRFGFEVKLIARKTRKKVGFSDTRITD*

>peptide 3 (43 aa)
MLRVANSTPIVDLDSRLNSLRVKRERRLDFPTPESPINTTLNK*

>peptide 4 (44 aa)
MTWHPQWKQHASASNLPCSPRALSRCWNLYGLLVPLTISRYFQM*

>peptide 5 (60 aa)
MKKRFSLSANDLASSVETARKCLKSALFATSIITMLESVWSLSSFNHLSIFSNVTCLVTS*

>peptide 6 (69 aa)
MRKHLIHHTTSLGGTATNLFHFRHIILTSNINGLTLRQGSRVTPNIKCFAAHNMIYLGEDFAKCVFNVQ*

Sequence

>CNT30402584
GCTCTTCAAAGTTCTGACATGAATAAAAATGTATACTTGGAACAAAACCCATAGTTTTCTGTGAGAACTTTACAAAAATTTTCAAGTGTGATGAGAAAGC
ATCTCATTCATCATACAACCAGCTTAGGCGGAACAGCAACCAACCTTTTTCACTTCCGACACATCATCCTTACTTCCAATATCAATGGTTTGACCCTTAG
GCAAGGCAGTCGGGTCACTCCCAATATCAAGTGCTTTGCGGCACACAACATGATATACTTGGGTGAGGACTTCGCTAAATGCGTTTTCAACGTTCAATGA
TTCCAGGGCAGATGTTTCCATGAAAAAGAGATTCTCTCTTTCGGCAAATGACTTGGCATCCTCAGTGGAAACAGCACGCAAGTGCCTCAAATCTGCCTTG
TTCGCCACGAGCATTATCACGATGCTGGAATCTGTATGGTCTCTTAGTTCCTTTAACCATCTCTCGATATTTTCAAATGTGACATGCCTGGTAACATCGT
AAACCAGTAGAGCACCAACAGCCCCTCTGTAATAAGCACTAGTGATAGCACGGTACCTTTCTTGGCCAGCAGTGTCCCAAATCTGAGCTTTAACAATCTT
ATCATCGACATGAATGCTACGAGTAGCAAATTCAACGCCGATTGTAGATTTGGATTCGAGGTTAAACTCATTGCGCGTAAAACGAGAAAGAAGGTTGGAT
TTTCCGACACCAGAATCACCGATTAATACTACTTTGAACAAGTAATCGTAGTCGTCGTCTGCTCTGTAAGCCGACATCTTTGAAGTTTCTCTCTCCTCTT
ATTCTTGTTTTTGTTCGTGTTGTTTTTGCTTTCTCTCTCTACTGAGTCGTGAGAGATGAGGGGTTGAAGACGAAGAAAGATTATATGAATTTTTGAAAAT
GGAGGGTTTGTTTGGATTTTTTTTATTTTTGTATATTTTTTGGAGAGAGAGAGAGAGAGGTGGGAAAGTGGAAATGGAGAACTTGTGACAAGTCGTGGGG
CGGGTGTAGGCTTCGAAATTAC