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Detailed information on CNT30692241


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40193|RB11C_LOTJA, E-value = 2e-97

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673091Oryza sativaSetaria viridis25.8243.882.53166forward
CNT30378531Oryza sativaArabidopsis thaliana20.6831.7481.2133forward
CNT30689504Oryza sativaTriticum urartu35.314.3881.94227forward

Expression of CNT30692241

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MVDLDSRQNSLRVNRERMLDLPTPESPMSTILKR*

>peptide 2 (60 aa)
GRTASSLCVNSRISNIDGGSLSGRSTACCLLGSKCLLADDLMNIFKDSLKCLLNIKGFQS*

Sequence

>CNT30692241
TAGGAAGAACAGCATCCTCTCTTTGTGTTAACAGCAGAATCAGTAACATTGATGGTGGTTCCTTGAGTGGGAGGTCCACTGCCTGCTGCCTCTTGGGCAG
CAAGTGCCTTCTTGCTGATGATTTGATGAATATCTTTAAGGATAGTCTGAAATGCCTTCTCAACATTAAGGGCTTCCAGAGCTGAGGTCTCGAGGAATGA
TAGACCTTCCTTCTCTGCTAGTGCCTGACCATCTTCCTCTGGAACTGATCTCAGGTGGTTAAGGTCTGATTTGTTGCCTACCATCATAATGACAATGTTG
GAGTCCGCATGATCACGAAGTTCACGAAGCCACCTCTGGATGTTTTCAAACGTCTGCTTCTTTGTTATGTCATAGACTAGAAGTGCCCCCACAGCTCCCC
GGTAGTAAGCACTTGTGATTGCACGGTACCTCTCCTGCCCAGCAGTATCCCATATCTGAGCTTTGATGGTCTGCCCTTCTATCTCGTGCGGGTGGCGAAC
TCGACGCCAATGGTGGACTTGGACTCGAGGCAGAACTCGTTGCGGGTGAATCGCGAGAGGATGTTGGACTTGCCGACGCCGGAGTCGCCGATGAGCACGA
TCTTGAAGAGGTAGTCGTACTCGTTGTCCACCCGGTGCGCCAT