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Detailed information on CNT30370753


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694788Oryza glumipatulaOryza sativa71.66100.4897.15632forward
CNT3067805Oryza glumipatulaLeersia perrieri23.0254.2885.71203forward
CNT30596666Oryza glumipatulaOryza meridionalis10095.9796.26882forward
CNT30107505Oryza glumipatulaOryza longistaminata60.4349.498.12533forward
CNT30102548Oryza glumipatulaOryza rufipogon60.0957.1197.74530forward
CNT30577029Oryza glumipatulaOryza barthii66.5557.2197.27587forward
CNT30117130Oryza glumipatulaOryza nivara98.6499.4396.78870forward

Expression of CNT30370753

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MSGTFAANAMASAKWKHSERIDLLISLSLQTLLLTLDSTQAVVARC

>peptide 2 (36 aa)
RDTCSFYSWYICTHIHNTRAYICFIIRSTPAQMQQH*

>peptide 3 (35 aa)
MQWQAPNGSTVRGLISSSRCHYKLYYSLLTVHKLW*

>peptide 4 (35 aa)
MLYYKKHACSDATALRKHIDSHMDTYTSEQHTTNT*

Sequence

>CNT30370753
CAGGGATACATGCTCTTTTTATTCATGGTATATATGTACGCACATACATAACACACGTGCATATATATGCTTTATTATAAGAAGCACGCCTGCTCAGATG
CAACAGCATTAAGAAAACACATAGATAGCCACATGGACACATACACCAGTGAACAACACACGACAAACACATAGATAGTCACTAGAGCAATAGTACATAC
CAAAACTATGCGGAATCATACGTAGCAAACAACCAAGTCTACTCAGTTCCCGGGCACAATTACAGCTATTGCTGGTGAAAGAGGTGGTGGCTTTGGCAGA
GATCGCTCTGGCTGAGGCTTGGGTTCTGTCTTAGGATCAGGCTGTGGCTCTGGCTTAGGATTAGGATTTGGCTTGGGGTTAGGACTTGGCTCAGGTTTGG
GTTTAGGCTTTGGCTCTGGCTTAGGATTTGGGCTCGGCTCCGGTTGTGGCTTAGGCTTTGGATTTGGTTTTGGGTCAGCATTGGGGCTAGGTTGCGGGTT
CGGTTGAGGATCTTGTTTCGGGTCAGGCTGTGGGTTCGGCTGAGGATCTTGTTTTGGGTTAGGCTGTGGTGTAGGTTTTGGGTCAGGCTGCGGTGATGGT
TTTGGATCTGGCTGTGGGTTAGGTTGAGGGTTAGGCTGTGGACTGGGTTTTGTCTCTGGTTGTGGTTTTGGTGTTGGGTCAGGTTTAGGCTTGGGATCTG
CTGGCTTTGGATCAGATTTAGCTTCAATCACGCGTCCATTGGCAATGTCAGGAACATTTGCCGCCAATGCAATGGCAAGCGCCAAATGGAAGCACAGTGA
GAGGATTGATCTCCTCATCTCGTTGTCACTACAAACTCTACTACTCACTCTTGACAGTACACAAGCTGTGGTAGCTAGGTGT