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Detailed information on CNT30596666


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694788Oryza meridionalisOryza sativa68.77100.4896.68632forward
CNT30370753Oryza meridionalisOryza glumipatula95.9710096.26882forward
CNT30577029Oryza meridionalisOryza barthii66.8159.8494.14614forward
CNT30117130Oryza meridionalisOryza nivara96.74101.694.26889forward

Expression of CNT30596666

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MQWQAPNGSTVRGLISSSRCHYKLYYSLLTVHKLW*

>peptide 2 (46 aa)
MSGTFAANAMASAKWKHSERIDLLISLSLQTLLLTPDSTQAVVARCV

>peptide 3 (37 aa)
RYNFIKQPRNSDTQGYMLFYSWYVRTYITHMHIYALL*

>peptide 4 (35 aa)
MLYYKKHACSHATALRKHIDSHMDTPVNNTRQTHR*

Sequence

>CNT30596666
ACAGATACAATTTCATAAAACAGCCCAGAAATAGTGACACACAGGGATACATGCTCTTTTATTCATGGTATGTACGCACATACATAACACACATGCATAT
ATATGCTTTATTATAAGAAGCACGCCTGCTCACATGCAACAGCATTAAGAAAACACATAGATAGCCACATGGACACACCAGTGAACAACACACGACAAAC
ACATAGATAGTCACTAGAGCAATAGTACATACCAAAACTATGCGGAATCATACGTAGCAAACAACCAAGTCTACTCAGTTCTCGGGCACAATTATAGCTA
TTGCTGGTGAAAGAGGTGGTGGCTTTGGCAGAGATGGCTCTGGCTGAGGCTTGGGTTCTGGCTTAGGATCAGGCTGTGGCTCCGGCTTGGGATTAGGATT
TGGCTTGGGGTTAGGACTCGGCTCAGGTTTGGGTTCTGGCTTTGGCTCCGGCTTAGGATTTGGGGTCGGCTCCGGCTGTGGCTTGGGCTTTGGATTTGGT
TTTGGGTCAGCTTTGGGGCTAGGTTGTGGGTTCGGTTGAGGATCTTGTTTCGGGTCAGGCTGTGGGTTCAGCTGAGGATCTTGTTTTGGGTCAGGCTGTG
GTGTAGGTTTTGGGTCAGGCTGCGGTGATGGTTTTGGATCCGGCTGTGGGTTAAGTTGAGGGTTAGGCTGTGGACTGGGCTTTGTCTCTGGTTGTGGTTT
TGGTGTTGGGTCAGGTTTCGGCTTGGGATCTGCTGGCTTTGGATCAGATTTAGCTTCAATCACGCGTCCATTGGCAATGTCAGGAACATTTGCCGCCAAT
GCAATGGCAAGCGCCAAATGGAAGCACAGTGAGAGGATTGATCTCCTCATCTCGTTGTCACTACAAACTCTACTACTCACTCCTGACAGTACACAAGCTG
TGGTAGCTAGGTGTGTTGC