Detailed information on CNT3067805


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695200Leersia perrieriOryza sativa39.0420.5388.36146forward
CNT30554448Leersia perrieriOryza glaberrima49.4718.5485.41185forward
CNT30596649Leersia perrieriOryza meridionalis51.0719.985.34191forward
CNT30370753Leersia perrieriOryza glumipatula54.2823.0285.71203forward
CNT30107505Leersia perrieriOryza longistaminata58.2920.285.32218forward
CNT30102548Leersia perrieriOryza rufipogon26.210.5691.8498forward
CNT30577188Leersia perrieriOryza barthii54.5526.3985.29204forward
CNT30117116Leersia perrieriOryza nivara49.4719.2985.95185forward
CNT30604356Leersia perrieriOryza punctata60.9624.9584.65228forward

Expression of CNT3067805

Peptides detected in this lncRNA

>peptide 1 (46 aa)
LGVGSGFGSGFGSGLGFGFGSGCGLGFGFGFGSGCGAGFGSGCGLG*

>peptide 2 (93 aa)
RSWLRLRFRLWLWFGIWVWLRLRVRLWIWFWVRLWCWLWIWLWVRLRVRLWSGLCFWFRFWCWSRFRLRVYWFGIRFSFDHTPIGKVRNIGQQ*

Sequence

>CNT3067805
CTAGGAGTTGGCTCAGGCTTCGGTTCAGGCTTTGGCTCTGGTTTGGGATTTGGGTTTGGCTCCGGCTGCGGGTTAGGCTTTGGATTTGGTTTTGGGTCAG
GCTGTGGTGCTGGCTTTGGATCTGGTTGTGGGTTAGGTTGAGGGTTAGGCTGTGGAGTGGGCTTTGTTTCTGGTTCAGGTTTTGGTGTTGGAGCAGGTTC
AGGCTTCGGGTCTACTGGTTTGGGATCAGATTTTCTTTCGATCACACGCCCATCGGCAAGGTCAGGAACATTGGCCAGCAGTAGTACAATGACAAGAGCC
AAATGGAAACACAGGGAGAGGGCAGCAGATCTCCTCATCGTTGCCACTACAAACTCGACTGTTCCCTTGCTACT