« Back to Oryza barthii search


Detailed information on CNT30577029


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695200Oryza barthiiOryza sativa46.7867.5196.46480forward
CNT30596666Oryza barthiiOryza meridionalis59.8466.8194.14614forward
CNT30370753Oryza barthiiOryza glumipatula57.2166.5597.27587forward

Expression of CNT30577029

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MSGTFAANAMASAKWKHSERIDLLISLSLQTLLLTLD

>peptide 2 (28 aa)
MQWQAPNGSTVRGLISSSRCHYKLYYSLL

>peptide 3 (35 aa)
MLYYKKHACSDATSLRKHIDSHMDTYTSEQHMTNT*

Sequence

>CNT30577029
ATAAAACAGCCCAGAAATAGTGACACACAGGGACACATTCTCTTTTTATTCATGGTATATATGTACGCACATACATAACACACGTGCATATATATGCTTT
ATTATAAGAAGCACGCCTGCTCAGATGCAACATCATTAAGAAAACACATAGATAGCCACATGGACACATACACCAGTGAACAACACATGACAAACACATA
GATAGTCACTAGAGCAATACTACATACCAAAACTATGCGGAATCATACGTAGCAAACAACCAAGTCTACTCAGTTCCCGGGCACAATTACAGCTATTGCT
GGTGAAAGAGGTGGTGGCTTTGGCAGAGATCGCTCTGGCTGAGGCTTGGGTTCTGGCTTAGGATCAGGCTGTGGCTCCGGCTTAGGATTAGGATTTGGCT
TGGGGTTAGGACTTGGCTCAGGTTTAGGTTCAGGCTTTGGCTCTGGCTTAGGATTTGGGCTTGGCTCCGGTTGTGGCTCAGGCTTTGGATTTGGTTTTGG
GTCAGCTTTGGGGCTAGGTTGCGGGTTCGGTTGAGGATCTTGTTTCGGGTCAGGCTGTGGGTTCGGCTGAGGATCTTGTTTTGGGTTAGGTTGCGGCGTT
GGTTTTGGGTCAGGTTGTGGGTTCGGTTGAGGATCTTGTTTTGGGTCAGGCTGTGGTGTAGTTTTCGGGTCAGGCTGCGGAGATGGTTTTGGATCTGGTT
GTAGGTTTGGTTGAGGATCTTGTTTTGGTTCAGGCTGTGGTGTAGGTTTTGGGTCAGGCTGCGGTGATGGTTTTGGATCTGGCTGTGGGTTAGGTTGAGG
GTTAGGCTGTGGACTGGGTTTTGTCTCTCGTTGTGGTTTTGGTGTTGGGTCAGGTTTAGGCTTGGGATCTGCTGGCTTTGGATCAGATTTAGCTTCAATC
ACGCGTCCATTGGCAATGTCAGGAACATTTGCCGCCAATGCAATGGCAAGCGCCAAATGGAAGCACAGTGAGAGGATTGATCTCCTCATCTCGTTGTCAC
TACAAACTCTACTACTCACTCTTGAC