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Detailed information on CNT30107505


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694748Oryza longistaminataOryza sativa37.5355.1898.52405forward
CNT30554256Oryza longistaminataOryza glaberrima68.0376.398.37734forward
CNT3067805Oryza longistaminataLeersia perrieri20.258.2985.32218forward
CNT30596669Oryza longistaminataOryza meridionalis68.4976.7492.69739forward
CNT30370753Oryza longistaminataOryza glumipatula49.460.4398.12533forward
CNT30102548Oryza longistaminataOryza rufipogon75.2587.598.15812forward
CNT30577160Oryza longistaminataOryza barthii74.1478.997800forward
CNT30117164Oryza longistaminataOryza nivara96.4899.2498.081041forward
CNT30604356Oryza longistaminataOryza punctata53.3863.0291.67576forward

Expression of CNT30107505

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MQWQAPNGSTVRGLISSFRCYYKLYYSLLTVHKLW*

>peptide 2 (39 aa)
MCIYMLYYKKHACSDATALRKHIDSHMDTYTSEQHTTNT*

>peptide 3 (44 aa)
MSGTFAANAMASAKWKHSERIDLLISLLLQTLLLTLDSTQAVVAT

>peptide 4 (34 aa)
SHQQNRYNFIKQPRNSDTQGYMLFLFMVYMYAHT*

Sequence

>CNT30107505
TCACATCAGCAGAACAGATACAATTTCATAAAACAGCCCAGAAATAGTGACACACAGGGATACATGCTCTTTTTATTCATGGTATATATGTACGCACATA
CATAATACATGTGCATATATATGCTTTATTATAAGAAGCACGCCTGCTCAGATGCAACAGCATTAAGAAAACACATAGATAGCCACATGGACACATACAC
CAGTGAACAACACACGACAAACACATAGATAGTCACTAGAGCAATAGTACATACCAAAACTATGCAGAATCATACGTAGCAAACAACCAAGTCTACTCAG
TTCCCGGGCACAATTATAGCTATTGCTGGTGAAAGAGGTGGTGGCTTTGGCAGAGATGGCTCTGGCTGAGGCTTGGGTTCTGGCTTAGGATCAGGCTGTG
GCTCCGGCTTAGGATTAGGATTTGGCTTGGGGTTAGGACTTGGCTCAGGTTTGGGTTCAGGCTTTGGCTCCGGCTTAGGATTTGGGCTCGGCTCCGGTTG
TGGCTTAGGCTTTGGATTTGGTTTTGGGTCAGCTTTGGGGCTAGGTTGCGGGTTCGGTTGAGGATCTTGTTTCGGGTCAGGCTGTGGCGTTGGTTTTGGG
TCAGGCTGTGGGTTCGGCTGAGGATCTTGTTTTGGGTTAGGTTGCGGCGTTGGTTTTGGGTCAGGTTGTGGGTTCGGTTGAGGATCTTGTTTTGGGTCAG
GCTGTGGTGTAGGTTTCGGGTCAGGCTGCGGAGATGGTTTTGGATCCGGTTGTGGGTTTGGTTTAGGATCTTGTTTTGGGTCAGGCTGCGGTGATGGTTT
TGGATCTGGCTGTGGGTTAGGTTGAGGGTTAGGCTGTGGACTGGGCTTTGTCTCTGGTTGTGGTTTTGGTGTTGGGTCAGGTTTAGGCTTGGGATCTGCT
GGCTTTGGATCAGATTTAGCTTCAATCACGCGTCCATTGGCAATGTCAGGAACATTTGCCGCCAATGCAATGGCAAGCGCCAAATGGAAGCACAGTGAGA
GGATTGATCTCCTCATTTCGTTGTTACTACAAACTCTACTACTCACTCTTGACAGTACACAAGCTGTGGTAGCTACTAG