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Detailed information on CNT30369883


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677994Oryza glumipatulaSetaria viridis10.1125.6591.0189forward
CNT30553167Oryza glumipatulaOryza glaberrima60.4510099.25532forward
CNT30596824Oryza glumipatulaOryza meridionalis49.6670.3782.84437forward
CNT30105288Oryza glumipatulaOryza longistaminata93.18106.2286.71820forward
CNT30101086Oryza glumipatulaOryza rufipogon95.5798.8297.86841forward
CNT30575473Oryza glumipatulaOryza barthii90.5710097.99797forward
CNT30116313Oryza glumipatulaOryza nivara44.6670.0599.49393forward

Expression of CNT30369883

Peptides detected in this lncRNA

>peptide 1 (56 aa)
LASTVRVELTGMQKRRDAVRTDAYTMRSIEYKLINQLCRYTYTRRRMKHALITSWN*

>peptide 2 (41 aa)
MGRLRARSVAITPAFVAMPTHRTAPADRSRSMAWPLPSFAC*

Sequence

>CNT30369883
AGCTAGCTAGTACAGTACGTGTAGAATTAACAGGCATGCAGAAAAGACGAGATGCAGTACGTACTGATGCATATACGATGAGATCCATCGAGTACAAATT
AATTAATCAATTATGCAGATACACATATACACGTAGACGAATGAAGCATGCTTTAATTACGTCGTGGAACTGAATCATATGCATGCATATATATCTCATT
AATTTACGGGATGAAGGGGAAATTAAGGCACGCAGATACATATGATGATTTGAACAAGGAACAAATTAGACATAGATAGATATATAGTTGTACGTGGCCT
GGTGGTCGTTCTTCGTACGTTCTTGTGTGTAGCAAGCAGTGAAGTAGAATGGAGCAGCAGCTATATTAGTTGCTGCACTGGAAGCCGGAGGGGACGGAGC
GGCCGCAGTAGTTGACGAGGAGGCTGAGGTTGATGGGGAGGTTGAGGGCCAGGAGCGTGGCGATCACCCCAGCTTTCGTCGCCATGCCCACCCACCGCAC
TGCACCTGCAGATCGATCTCGATCTATGGCCTGGCCTCTACCTAGCTTTGCTTGCTAGCCAGTGTATTCAGATACATCTATCGACCAAGGGGTGCACTCA
TATTTATAATAGGATCGGAGTACCTTCAATTACTTAACCAGCTACCACATCACTCAACTAATTAATTAACTAATCGGATTTTAACTAGGATTTCATCTTA
GGTGCAGCTCACATCACTACAGCGTAACTACTACTAGTGACCTAGCTAGCTAGCTGGCCTGGAGTACATTAATTCATTGGAGTATAGTGCTACTAGCTAG
TGGGCTTTTGGTAGCTTAGCTGGCCGCAAGGACGATTGAGTTGGAGGCCAAGTACTCTGCTAGCGAGCATATATATACAC