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Detailed information on CNT30575473


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677994Oryza barthiiSetaria viridis11.1725.6591.0189forward
CNT30553167Oryza barthiiOryza glaberrima66.7510099.81532forward
CNT30369883Oryza barthiiOryza glumipatula10090.5797.99797forward
CNT30101086Oryza barthiiOryza rufipogon10093.6596.61797forward

Expression of CNT30575473

Peptides detected in this lncRNA

>peptide 1 (38 aa)
VRTDAYTMRSIEYKLINQLCRYTYTSRRMKHALITSWN*

>peptide 2 (41 aa)
MGRLRARSVAITPAFVAMPTHRTAPADRSRSMACPLPSFAC*

Sequence

>CNT30575473
GTACGTACTGATGCATATACGATGAGATCCATCGAGTACAAATTAATTAATCAATTATGCAGATACACATATACAAGTAGACGAATGAAGCATGCTTTAA
TTACGTCGTGGAACTGAATCATATGCATGCATATATATCTCATTAATTTACGGGATGAAGGAGGAAATTAAGGCACGCAGATACATATGATGATTTGAAC
AAGGAACAAATTAGACATAGATAGATATATAGTTGTACGTGGCCTGGTGGTCGTTCTTCGTACGTTCTTGTGTGTAGCAAGCAGTGAAGTAGAATGGAGC
AGCAGCTATATTAGTTGCTGCACTGGAAGCCGGAGGGGACGGAGCGGCCGCAGTAGTTGACGAGGAGGCTGAGGTTGATGGGGAGGTTGAGGGCCAGGAG
CGTGGCGATCACCCCAGCTTTCGTCGCCATGCCCACCCACCGCACTGCACCTGCAGATCGATCTCGATCTATGGCCTGCCCTCTACCTAGCTTTGCTTGC
TAGCCAGTGTATTCAGATACATCTATCGACCAAGGGGTGCACTCATATTTATAATAGGATCGGAGGTACTAGCGGAGTACCTTCAATTACTTAACCAGCT
ACCACATCACTTAACTAATTAATTAACTAATCGGATTTTAACTAGGATTTCATCTTAGGTGCAGCTCACATCACTACAGCGTAACTACTACTAGTGACCT
AGCTAGCTAGCTGGCCTGGAGTACATTAATTCATTGGAGTATAGTGCTACTAGCTAGTGGGCTTTTGGTAGCTTAGCTGGCCGCAAGGACGATTGAG