Detailed information on CNT30596824


BLAST search results

BLAST vs Swiss-Prot:
sp|Q39176|ERLI1_ARATH, E-value = 7e-20

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677994Oryza meridionalisSetaria viridis11.7621.0489.0473forward
CNT30553261Oryza meridionalisOryza glaberrima86.4799.2686.03537forward
CNT30369883Oryza meridionalisOryza glumipatula70.3749.6682.84437forward
CNT30105287Oryza meridionalisOryza longistaminata35.134.8891.28218forward
CNT30101048Oryza meridionalisOryza rufipogon85.9981.0385.39534forward
CNT30116313Oryza meridionalisOryza nivara82.1390.9186.08510forward

Expression of CNT30596824

Peptides detected in this lncRNA

>peptide 1 (35 aa)
KDEMQYVLIDAYTMRLIEYKLINQLYMQKEKHIYT*

>peptide 2 (72 aa)
MGRLRLQHGCRGGVPSCTFISPFSTFAHTPSFSVSIGHLPPPPPPPPPPPPPLPPPPEPPPEPPPLPPPPEPP

Sequence

>CNT30596824
AAAAGACGAGATGCAGTACGTACTGATCGATGCATATACGATGAGATTGATCGAGTACAAATTAATTAATCAATTATATATGCAGAAAGAGAAACACATA
TACACGTAGACGAATGAAGCATGCATCGTGGAAGTGGAACTGAAGCATGCATGCATATATATCTCATTAATTTACGGGATGAAGGAGGAAATTGATACAT
ATGATGATTTGAACAAGGAACAAATGATAGTATTAGACATAGATAGATAGATATATAGTTGTACGTGGTGGTCGTTCACTCTCGTACGTGTAGCATATAG
CAAGCAGTGAAGTAGAATGGATGGAGCTGCAGGCTAGTTGCTGCACTGGAAGCCGGAGGGGACGGAGCGGCCGCAGTAGTTGACGAGGAGGCTGAGGTTG
ATGGGGAGGTTGAGGCTGCAACACGGCTGCCGCGGCGGCGTCCCCAGCTGCACGTTTATCAGCCCATTCAGCACGTTCGCGCACACCCCCAGCTTCAGCG
TGTCGATCGGGCATCTTCCTCCGCCGCCGCCTCCTCCTCCGCCGCCGCCTCCGCCGCTTCCTCCACCACCTGAACCCCCACCTGAACCTCCGCCGCTTCC
TCCACCACCTGAACCTCCGCC