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Detailed information on CNT30553167

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30677994	Oryza glaberrima	Setaria viridis	16.73	25.65	89.89	89	forward
CNT30369883	Oryza glaberrima	Oryza glumipatula	100	60.45	99.25	532	forward
CNT30101086	Oryza glaberrima	Oryza rufipogon	100	62.51	97.18	532	forward
CNT30575473	Oryza glaberrima	Oryza barthii	100	66.75	99.81	532	forward

Expression of CNT30553167

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MGRFRARSVAITPAFVAMPTHRTAPADRSRSMACPLPSFAC*

>peptide 2 (37 aa)
RTDAYTMRSIEYKLINQLCRYTYTSRRMKHALITSWN*

Sequence

>CNT30553167
TACGTACTGATGCATATACGATGAGATCCATCGAGTACAAATTAATTAATCAATTATGCAGATACACATATACAAGTAGACGAATGAAGCATGCTTTAAT
TACGTCGTGGAACTGAATCATATGCATGCATATATATCTCATTAATTTACGGGATGAAGGAGGAAATTAAGGCACGCAGATACATATGATGATTTGAACA
AGGAACAAATTAGACATAGATAGATATATAGTTGTACGTGGCCTGGTGGTCGTTCTTCGTACGTTCTTGTGTGTAGCAAGCAGTGAAGTAGAATGGAGCA
GCAGCTATATTAGTTGCTGCACTGGAAGCCGGAGGGGACGGAGCGGCCGCAGTAGTTGACGAGGAGGCTGAGGTTGATGGGGAGGTTCAGGGCCAGGAGC
GTGGCGATCACCCCAGCTTTCGTCGCCATGCCCACCCACCGCACTGCACCTGCAGATCGATCTCGATCTATGGCCTGCCCTCTACCTAGCTTTGCTTGCT
AGCCAGTGTATTCAGATACATCTATCGACCAA