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Detailed information on CNT30105288


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30553210Oryza longistaminataOryza glaberrima64.7788.8189500forward
CNT30369883Oryza longistaminataOryza glumipatula106.2293.1886.71820forward
CNT30101086Oryza longistaminataOryza rufipogon105.9696.1286.92818forward
CNT30575582Oryza longistaminataOryza barthii67.6290.6289.85522forward
CNT30116266Oryza longistaminataOryza nivara74.35103.885.37574forward

Expression of CNT30105288

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MRSIEYKLINQLCRYTHTRRRMKHALITSWN*

>peptide 2 (55 aa)
MDGAAALVAALEAGRDGAAAVVDEEAEVQGQERGDHPSFRRHAHPPHCTCRWPGL*

Sequence

>CNT30105288
CGAACAAGAGCTAGCTAGTACAGTACGTGTAGAACAGGCATGCAGAAAAGACGAGATGCAGTACGTACTGATATGATGCATATACGATGAGATCCATCGA
GTACAAATTAATTAATCAATTATGCAGATACACACATACACGTAGACGAATGAAGCATGCTTTAATTACGTCGTGGAACTGAATCATATGCATGCATATA
TATCTCTTTAATTTACGGGATGAAGGAGGAAATTAAGGCACGCAGATACATATGACGATGATTTGAACAAGGAACAAATTAGACATAGATAGATTGATAT
ATAGTTGTACGTGGCCTGGTGGTCGTTCTTCGTTCTCGTGTGTAGTGAGGAATGGATGGAGCTGCAGCTCTAGTTGCTGCACTGGAAGCCGGAAGGGACG
GAGCGGCCGCAGTAGTTGACGAGGAGGCTGAGGTTCAGGGCCAGGAGCGTGGCGATCACCCCAGCTTTCGTCGCCATGCCCACCCACCGCACTGCACCTG
CAGATGGCCTGGCCTCTAGCTAGCCAGTGTATTCAGATACATCTATCGACCAAGGGGGTGCACTCATATTTATAATAGGATCGATCGGAGGTACTAGCGG
AGTACCTTCAATTACTTAACCAGCTACCACATCACTTAACTAACTAATTAATTAATCGAATTTTAACTAGGATTTCATCTTAGGTGCAGCTCACATCACT
ACTCCTACAGCGTAACTACTACTAGTGACCTAGCTAGCTAGCTGGCCTGGAGTACATTAATTCATTGGAGTA