Detailed information on CNT30285585


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696916Triticum aestivumOryza sativa44.3954.7686.32190forward
CNT30522780Triticum aestivumSetaria italica44.3922.4987.37190forward
CNT30451043Triticum aestivumSaccharum spontaneum44.3922.388.42190forward
CNT30138690Triticum aestivumLolium perenne48.1343.0184.47206forward
CNT305922Triticum aestivumZea mays48.656.6890.38208forward
CNT30368207Triticum aestivumSorghum bicolor44.3971.1688.95190forward
CNT30576580Triticum aestivumOryza barthii48.1349.7691.75206forward

Expression of CNT30285585

Peptides detected in this lncRNA

>peptide 1 (59 aa)
MMGLQMPSSSFILSSNSSASASWLASSQLMVPSIASSTFFLSSAPSFEAILSSLTVLRML

>peptide 2 (41 aa)
MTRRQTTDTTERHRKDTHQATRRPETTTEQQKLSPPPRSWR*

>peptide 3 (40 aa)
KFKREALSFKGSKTTSKHHDPSCPSDQRLQRTTTTTTSSY*

Sequence

>CNT30285585
CCAAATTTAAACGAGAAGCTCTAAGCTTCAAGGGTTCCAAAACAACAAGCAAACATCATGATCCATCATGTCCTTCAGACCAACGACTCCAACGAACCAC
TACTACTACTACTTCCAGCTACTAGATGACACGACGACAGACGACTGACACCACCGAGCGGCATCGAAAGGACACCCATCAAGCAACGCGCAGACCGGAG
ACCACCACGGAACAACAAAAGCTTAGTCCACCTCCTCGATCTTGGCGATGATGGGGTTGCAGATGCCCTCCAGCTCCTTCATCTTGTCCTCGAACTCGTC
GGCCTCGGCGAGCTGGTTGGCGTCCAGCCAGCTGATGGTGCCCTCGATCGCGTCCTCCACCTTCTTCTTGTCGTCCGCCCCGAGCTTCGAGGCGATCTTG
TCGTCCTTGACCGTGTTGCGCATGTTGT