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Detailed information on CNT30522235


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671891Setaria italicaSetaria viridis3.34209050forward
CNT3014953Setaria italicaZea mays11.0826.3980.12166reverse complement
CNT30227885Setaria italicaAnanas comosus8.4837.5785.04127forward
CNT30362959Setaria italicaSorghum bicolor11.2870.4291.12169forward
CNT30369827Setaria italicaOryza glumipatula7.6842.5986.96115forward
CNT30153003Setaria italicaPrunus persica7.7454.2184.48116forward

Expression of CNT30522235

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MLTKAHQSTFCTIEASTLLRILAYQSINYTVLSKSIAKV*

>peptide 2 (32 aa)
MALKQGCQQFKIPPETMQPSKKSFTMRRLTGR*

>peptide 3 (42 aa)
GKSKYSLARTGNTFIAQWHLNKAVNNSRFLQRLCSHLKNLSP*

Sequence

>CNT30522235
GGCAAGAGTAAATACTCCCTAGCAAGGACGGGAAACACATTCATAGCACAATGGCACTTAAACAAGGCTGTCAACAATTCAAGATTCCTCCAGAGACTAT
GCAGCCATCTAAAAAATCTTTCACCATGAGAAGACTGACCGGCAGATAATTATGTAGCATTCACTGATAAAAGTAGTAGCATAGTACCATAATCCAAAAC
TTGACAGCAAATAGCAACATCCAGCATCCTAAGCCTCTACTGTCTCAGTGGGGGCCTCAAGCATAAGACCCTTGGGCTTTGCCAGGAGGTCAGTGAACTC
CTGGAACGGAGTCTTGGTGAACTTGGTCTCCCTCCAGAACTCAGGTGTAAGGAAACCGTAGGTCTTCATCAGGCAGTCAAAGGTTGCCTGCACATAACCA
GATGAAACACTTACAAATGGCACCAAACAGGCATCAACAAGAGCAGATGACATAAATTGTACAAGATAATTAATATATTCATATACAAAGACAAGCTGGG
AATTCAGGATAAAGTTGAATTGCTTCTAATGAGTCAGGATTTTGAACTACAATGTAAATAGAAACACCCCATACAAATGTATCTTGAAACATAACAAACA
GCTTAAAGTTAGTTTCACGTAACCTAGGGTGTCAATAAGCAAAAGATTGTGAGAAACAACAAAATGCTATTCAGCCTGACCTATCTCCTAAAAAAAAGCA
AGGAACCAAGAAATGTCTAGCCTGCCTGAAATTTCATCATGTACATGGGAGTTATGGAATAGAACCATAATCTGAATTATATTAATCATAGATTCATAGC
ACCACAATGTCAAAATTGATCACACATTAGTGAGCATCTCCATAGACTACAAGCACTAAAACTGCTATACAAGCAACACATTCTGAACTAGCAAGTTTAT
AGATCCCTAGCCAATAACGTGACAGTACTTCTAACACATTGTAAACAACTAGTATATACATAAACCAAAGATCACATGCTAACAAAAGCACACCAATCAA
CATTTTGCACTATTGAAGCATCAACACTGCTACGCATACTGGCCTATCAGAGCATCAATTACACAGTCCTAAGTAAAAGCATTGCAAAGGTCTAGAATCA
TACGAGCATTTATAGTACAATATGCAGATCTTATTGTAGTACCTTCACGAAGTTGCCGAGGGTCTTGGTGGAGCCACGGGACGAGGGTCTCCACGATCTG
GTGCTCCTTGACGGGGAGCGAGTGGAGGTAGATCTCCTCGATCTTGCTGAACTTGTTCTCCTTCACGAGGCGGCCGAGCTTGGTGACGGGGACCCACTTC
TCCTCCTCCTGGCGCGGGCCGCGCCGGCCACCACGGCGCCCGCCACGGTCGCCGCGGCCACCGCGGCCGAAGCCCCGGCCGAACCCGCCGCGCTCGCCAC
CGCGCTCGCCGCCGCGCTCCGCCATGATTGGGTGAAGGGTGGGGGTGGTGGGGGCTGCGGCGCTCCGGTGAGTGAGGGGGATGAGGGTTTGGAGGCTG