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Detailed information on CNT30354785


BLAST search results

BLAST vs Swiss-Prot:
sp|P17786|EF1A_SOLLC, E-value = 8e-116

BLAST vs NONCODE:
NONMEST004097, E-value = 2e-40

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672466Lactuca sativaSetaria viridis26.9949.1684.09176forward
CNT30520930Lactuca sativaSetaria italica23.3155.6884.87152forward
CNT30509848Lactuca sativaSolanum lycopersicum25.6172.6183.23167forward
CNT30721628Lactuca sativaTriticum spelta26.9953.1785.23176forward
CNT30570869Lactuca sativaVitis vinifera28.8356.4681.38188forward

Expression of CNT30354785

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MISSYLAFEYLGVVASILLQQQIICLTPRVKARRACSRV*

>peptide 2 (51 aa)
SNLTRVVHDNHLRSKTRSTFSRIIFRIRSNIPTLDILHSNILHIESNIVTW*

Sequence

>CNT30354785
TTCCAATCTGACCCGGGTGGTTCATGATAATCACCTGAGAAGTAAAACTCGCAGCACCTTTAGCAGGATCATCTTTAGAATTCGAAGCAACATACCCACG
CTTGATATCCTTCACAGCAACATTCTTCACATTGAATCCAACATTGTCACCTGGTAGAGCCTCCAACAAAGCTTCATGATGCATTTCAACGGACTTCACT
TCAGTTGTTAAACCGGTTGGGCCAAAAGTGACGACCATTCCGGGTTTGATGATACCGGTTTCAACCCGCCCGACTGGAACAGTTCCAATTCCACCGATTT
TGTAAACGTCTTGAAGTGGGAGACGAAGTGGTTTGTCTGTGGGACGTTTTGGCTCGTTGATTTGGTCAAGAGCTTCAAGGAGAGTAGGTTGAGACTTCCT
TCATGATTTCATCGTATCTGGCTTTTGAGTATTTGGGGGTGGTGGCGTCCATTTTGTTGCAGCAACAGATCATTTGTTTGACACCGAGAGTGAAAGCGAG
GAGAGCGTGTTCACGGGTTTGACCATCTTTGGAGATACCAGCTTCGAAGCCACCGGTGGTGGAGTCGATGATGAGGACGGCGCAGTCGGCTTGGGAAGTT
CCGGTAATCATGTTCTTGATGAAATCACGATGGCCGGGAGCGTCGATGACTG