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Detailed information on CNT30334111


BLAST search results

BLAST vs Swiss-Prot:
sp|Q1EC66|UBQ3_ARATH, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 1e-129

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30701241Cynara cardunculusQuercus lobata80.5385.8782.07881forward
CNT3089455Cynara cardunculusVigna radiata82.0873.8583.18898forward
CNT30154607Cynara cardunculusPrunus persica83.2771.2883.1911forward
CNT30643414Cynara cardunculusCannabis sativa80.6283.8482.2882forward
CNT3051100Cynara cardunculusCucumis sativus83.4664.2583.02913forward

Expression of CNT30334111

Peptides detected in this lncRNA

>peptide 1 (70 aa)
MSSQRSAYRHGVVEPSEESIPSECCSLQESDRPPAAYPQRSTSAGLVGFPPCLGFSPSRCRWCPNSRLPT*

>peptide 2 (37 aa)
MVSELSTSNVMVFPVNVFTKICIPPRRRRTRWSVDSF*

>peptide 3 (37 aa)
MVSELSTSNVIVLPVNVLTKICIPPLRRRTKCRVDSF*

Sequence

>CNT30334111
AATACCAAAAGAACTAAGTCATAGATAAACCAGATTACCACATAACATTGTTCATAACAATAACAATAAACACAACCAGCAACAAACACGGATTTCAATT
ACTTCCACAAACCAACACTTGGCTTCAATTCCCACCACGAAGTCGAAGAACAAGGTGAAGAGTAGACTCTTTCTGAATATTGTAGTCTGCAAGAGTCCTT
CCATCCTCAAGTTGCTTCCCCGCAAAGATCAACCTCTGCTGGTCCGGTGGAATCCCTTCCTTGTCCTGAATCTTCGCCTTCACATTGTCGATCGTATCCG
AACTCTCCACCTCCAACGTAATTGTCTTCCCAGTCAATGTCTTCACAAAGATCTGCATACCGCCACGGAGTCGTAGAACCAAGTGAAGAGTCGATTCCTT
CTGAATGTTGTAGTCTGCAAGAGTCCGACCGTCCTCCAGCTGCTTACCCGCAAAGATCAACCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTGGATT
TTCGCCTTCACGTTGTCGATGGTGTCCGAACTCTCGACTTCCAACGTGATCGTCTTGCCGGTCAACGTCTTAACGAAGATCTGCATACCACCTCTTAGAC
GCAGAACCAAGTGCAGAGTTGATTCCTTCTGAATGTTGTAGTCGGCCAGGGTGCGGCCGTCTTCAAGTTGCTTACCGGCGAAGATCAATCTCTGCTGGTC
TGGTGGAATCCCTTCTTTGTCTTGGATTTTCGCTTTCACGTTGTCGATGGTATCCGAGCTTTCGACTTCCAACGTGATGGTCTTCCCGGTCAACGTCTTC
ACGAAGATCTGCATCCCACCACGGAGACGGAGGACAAGGTGGAGTGTGGACTCCTTCTGAATGTTGTAATCGGCCAAAGTTCGGCCGTCCTCGAGTTGCT
TTCCGGCGAAGATCAATCTTTGCTGATCTGGGGGAATTCCTTCCTTATCCTGGATTTTAGCCTTGACGTTATCGATTGTATCAGAACTCTCGACCTCGAG
AGTGATCGTCTTTCCAGTTAGGGTTTTAACGAAGATCTGCATCTAGAAATGAAGAACAGGAACAGATATCAATTGAAAAGAGATTGTTTTCGAT