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Detailed information on CNT30643414


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 5e-119

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30641251Cannabis sativaNymphaea colorata82.649.1283.77869forward
CNT30546269Cannabis sativaIpomoea triloba72.7285.1983.01765forward
CNT30274489Cannabis sativaChenopodium quinoa83.7571.9882.97881forward
CNT3019912Cannabis sativaCitrullus lanatus83.7552.7282.97881forward
CNT30728102Cannabis sativaCorchorus capsularis82.757.7382.3870forward
CNT30526024Cannabis sativaPhaseolus vulgaris83.4666.3683.37878forward
CNT3044330Cannabis sativaPrunus dulcis83.8472.1284.35882forward
CNT30169898Cannabis sativaPistacia vera83.7550.0383.65881forward
CNT3096790Cannabis sativaSolanum tuberosum76.1489.283.52801forward
CNT30233220Cannabis sativaBrassica oleracea71.9697.6883.75757forward
CNT30510145Cannabis sativaSolanum lycopersicum64.9247.9684.04683forward
CNT30312626Cannabis sativaCamelina sativa83.7567.9883.77881forward
CNT3077383Cannabis sativaBrassica juncea81.1865.984.66854forward
CNT30264722Cannabis sativaBrassica rapa81.1880.7283.72854forward
CNT30613113Cannabis sativaArabis alpina64.9274.3283.75683forward
CNT30217431Cannabis sativaKalanchoe fedtschenkoi83.7565.0783.2881forward
CNT30128346Cannabis sativaCorymbia citriodora63.2171.5884.51665forward
CNT30356895Cannabis sativaLactuca sativa81.7590.3481.98860forward
CNT30120658Cannabis sativaCitrus clementina80.8984.5982.84851forward
CNT30334111Cannabis sativaCynara cardunculus83.8480.6282.2882forward
CNT30114931Cannabis sativaEutrema salsugineum83.7579.4483.88881forward

Expression of CNT30643414

Peptides detected in this lncRNA

>peptide 1 (34 aa)
GKNGSFNINWSHWTKLKSKNFKTENKEHFVQQKD*

>peptide 2 (40 aa)
MVSEDSTSRVIVFPVKVLTKICIPPRSLSTKWSVDSFWML*

>peptide 3 (58 aa)
MRRCWSGGMPSLSWILALTLSIVSELSTSKVMVLPVRVFTKICIPPLKRSTKCRVDSF*

Sequence

>CNT30643414
GGCAAGAACGGGAGTTTTAACATTAACTGGTCTCACTGGACCAAATTAAAAAGTAAGAACTTTAAAACTGAAAATAAAGAACACTTTGTTCAGCAAAAGG
ATTAATAACAAGCCCATCAAAAGACACCACACCGAAAAGCAGAGACCGAACCTCCACTACTTCAGAAATCCCCACCACGAAGACGAAGAACAAGGTGGAG
GGTAGACTCCTTCTGAATGTTGTAATCAGCAAGAGTACGACCATCCTCCAATTGCTTCCCCGCAAAGATGAGACGCTGCTGGTCTGGAGGGATGCCTTCC
TTGTCTTGGATTTTAGCCTTGACATTGTCAATTGTGTCAGAGCTCTCCACCTCCAAAGTGATGGTTTTGCCCGTAAGGGTCTTCACGAAGATTTGCATAC
CACCCCTCAAACGCAGCACCAAGTGCAGAGTCGACTCCTTCTGAATGTTGTAGTCAGCAAGGGTGCGACCGTCCTCCAACTGCTTTCCAGCGAAAATCAG
ACGTTGCTGGTCCGGGGGAATTCCTTCCTTGTCCTGAATCTTGGCCTTAACGTTGTCGATTGTGTCTGAGCTCTCCACCTCGAGGGTGATCGTCTTCCCG
GTGAGGGTCTTAACAAAGATCTGCATACCACCACGGAGCCTGAGCACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGCAAGAGTACGTCCGT
CCTCAAGTTGCTTTCCGGCGAAGATCAGTCTCTGCTGGTCCGGGGGGATCCCTTCTTTGTCCTGGATCTTTGCTTTGACGTTGTCGATGGTGTCGGAAGA
TTCGACCTCGAGGGTGATCGTCTTTCCAGTCAAAGTCTTAACGAAGATCTGCATACCACCACGGAGCCTGAGCACCAAGTGGAGTGTGGATTCCTTCTGG
ATGTTGTAATCGGCGAGAGTACGTCCGTCCTCAAGTTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGGATCCCTTCTTTGTCCTGGATCTTAG
CTTTGACGTTGTCGATGGTGTCGGAAGATTCGACCTCGAGGGTGATAGTCTT