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Detailed information on CNT30327130


BLAST search results

BLAST vs Swiss-Prot:
sp|O23310|NFYB3_ARATH, E-value = 2e-70

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30617123Asparagus officinalisSesamum indicum1733.1985.7177forward
CNT30629314Asparagus officinalisVigna unguiculata24.7214.689.29112forward
CNT30234386Asparagus officinalisBrassica oleracea56.5128.3581.25256forward
CNT30705085Asparagus officinalisPrunus avium23.49.585.85106forward
CNT3035306Asparagus officinalisCucumis melo50.5529.2179.91229forward
CNT30115586Asparagus officinalisOryza nivara40.8433.3983.24185forward

Expression of CNT30327130

Peptides detected in this lncRNA

>peptide 1 (52 aa)
RPHPPSIEKTKNLQHCSLSHPPILCISAGKLSEALHTLQTLTLSLPIEDHPR*

>peptide 2 (40 aa)
APTLLRLRRRRTCSIAPFLTLQFSVFLQVNFQRLYILFKP*

>peptide 3 (81 aa)
MKLMNSETHSWTVSLASFEILAFAGRAFFMILLTFAIGRNRSCSLGDEKSLFPPALWPPDSLSESAMDWNLLNCWNWFFFFF

>peptide 4 (35 aa)
MKSHCSLQHCGLRIHYRNPPWIGTSSTVGIGFFFFF

Sequence

>CNT30327130
CGCCCCCACCCTCCTTCGATTGAGAAGACGAAGAACCTGCAGCATTGCTCCCTTTCTCACCCTCCAATTCTCTGTATTTCTGCAGGTAAACTTTCAGAGG
CTCTACATACTCTTCAAACCCTAACGTTGTCATTGCCCATAGAAGATCATCCCCGTTGATCGTCTTCCTTTTCTCCCTCTGGCATTTATCGGAGGCCTCG
CCAGTGATGAAGCTGATGAATTCAGAGACACACTCTTGGACTGTTTCCTTGGCGTCCTTCGAGATCTTGGCATTTGCAGGGAGGGCCTTCTTCATGATTC
TGCTCACGTTTGCGATCGGGAGGAACCGGTCTTGCTCTCTCGGGGATGAAAAGTCACTGTTCCCTCCAGCATTGTGGCCTCCGGATTCATTATCGGAATC
CGCCATGGATTGGAACCTCCTCAACTGTTGGAATTGGTTTTTTTTTTTTTTTT