Detailed information on CNT30115586


BLAST search results

BLAST vs Swiss-Prot:
sp|Q75IZ7|NFYB8_ORYSJ, E-value = 5e-74

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30539730Oryza nivaraBrassica napus15.5240.1987.2186forward
CNT30234386Oryza nivaraBrassica oleracea42.9626.3684.87238forward
CNT30327130Oryza nivaraAsparagus officinalis33.3940.8483.24185forward
CNT3035306Oryza nivaraCucumis melo35.0224.7481.44194forward
CNT30101601Oryza nivaraOryza rufipogon16.7943.4686.0293forward

Expression of CNT30115586

Peptides detected in this lncRNA

>peptide 1 (78 aa)
MAQSRSSPLMVLRFSRWHLSEASPVMKEMNSETHSCTVSLASLLILAFAGSAFFMILLTFAIGRNLSCSRGDDSSPPA*

Sequence

>CNT30115586
CCCGGGGCGGCGTACCCGGCGTAGCCGCCGGCGGCATTGGCGGTGTGCTGCTGCTGCGGCGGCGTGGTGGAGGTAGTGCTTGAGGGGGTCGACGTAGTCC
TCGAAGCCGAGGGTGGTCATGGCCCAGAGCAGGTCGTCGCCGTTGATGGTCTTGCGCTTCTCGCGCTGGCACTTGTCGGAGGCCTCGCCGGTGATGAAGG
AGATGAACTCGGAGACGCACTCCTGCACCGTCTCCTTGGCGTCCTTGCTGATCTTGGCGTTCGCCGGCAGCGCCTTCTTCATGATCCTGCTCACGTTCGC
GATCGGCAGGAACCTGTCCTGCTCCCGCGGCGACGACAGCTCCCCTCCCGCGTAGTTGCTCGGCCCGCCGGAGTCGTTGTCCGAGTCCGGCATCCTCCTC
CTCCTCTTCAGCAAATCAGACGCCTCAAAATCATCCCAAGAATAATCAATTTTCTCTCGAGAGAGAGAGAGAGACTAGAGGAGTGGGTGTTCTTGGGAGG
GACTGACTAGTCTAGGAGGAAGAAGAAGAGAAGAGAGAGAGAGAGAGAGATGGT