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Detailed information on CNT3035306


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FGJ3|NFYB2_ARATH, E-value = 4e-59

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30234386Cucumis meloBrassica oleracea22.5819.680.23177forward
CNT30327130Cucumis meloAsparagus officinalis29.2150.5579.91229forward
CNT30115586Cucumis meloOryza nivara24.7435.0281.44194forward

Expression of CNT3035306

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MNVVVVAVYSTGPNKNPMGRYGKRCPLAFNFSKPLEIKLERIHIVFEP*

>peptide 2 (43 aa)
MEEGEEELGFVKLGDVEVKCVCVCVCVREREREREIFVREDGNG

>peptide 3 (35 aa)
MAQSKSSPLIVFRFSLWHLSDASPVTKLMNSETHS*

Sequence

>CNT3035306
TTCACCATAATTATAATTGTTATAAAAACTATAAAATGCATATTTATTAAAATGAAAATACAACATTAAATTCATCTATTGTTATTATTATTATTTATCT
GCGTCACAATATCTTTTTATAAAATTAAAAAAAAAATAAAATAAAAATAAAAATAAAAAAGGTCACCTTCCCTCAGCTACACATCTTCATTTTACGGAGG
ATAAAGTGGAGATTTCGAATATCCCGTCGCCGTCGTAATGAATGTTGTAGTTGTAGCAGTGTATAGTACTGGGCCCAATAAAAACCCAATGGGTCGATAT
GGCAAGCGTTGTCCTCTCGCCTTCAATTTCTCGAAACCGTTGGAGATAAAGCTTGAGAGGATCCACATAGTCTTCGAACCCTAAGGTAGCCATGGCCCAG
AGCAAATCGTCGCCGTTGATAGTTTTTCGTTTCTCGTTATGGCACTTGTCGGATGCTTCACCGGTGACGAAGCTGATGAACTCGGAGACGCATTCTTGAA
CGGTTTCTTTGGCGTCTTTTGAGATCTTGGCGTTACCAGGGAGAGCTTTCTTCATGATCCGGCCGACGTTGGCGATCGGGAGGAGTCTGTCGTGTTCACG
TGGAGATGGGGATTTCTGGTAACCACCGCCGGAGTCGTTGTCGGAGTCCGCCATGGAAGAGGGGGAAGAGGAATTAGGGTTTGTGAAATTAGGGGATGTG
GAAGTGAAATGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGATCTTTGTAAGAGAGGATGGGAATGGG