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Detailed information on CNT30234386


BLAST search results

BLAST vs Swiss-Prot:
sp|O23310|NFYB3_ARATH, E-value = 1e-66

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30539730Brassica oleraceaBrassica napus16.0667.7691.03145forward
CNT30327130Brassica oleraceaAsparagus officinalis28.3556.5181.25256forward
CNT3035306Brassica oleraceaCucumis melo19.622.5880.23177forward
CNT30115586Brassica oleraceaOryza nivara26.3642.9684.87238forward

Expression of CNT30234386

Peptides detected in this lncRNA

>peptide 1 (83 aa)
MHPSTVHVSLMMMPHRHNPTVHPSSRRRTSSTIVSSSSAATSAPISSSSTFLIPLFPRGRPLPFHLPVLLQVNLQRLHVILEP*

>peptide 2 (67 aa)
MNSDTHSCTVSFASLEILAFAGNAFFMIRLTFAIGRNLSCSRDDELPPSLCPPESLSESAISETANG*

>peptide 3 (39 aa)
MSCLRPCARLNRCRNPPSRKRRTVNRREERKRESGLGPLD

Sequence

>CNT30234386
GGCAGTCTCTCACAATCTTAGTTTCTTGACTTTGTTACATCTTTTGGTTTTGGATTAGTTACATCTTGCTGCCTGTCTCTTTGGGAAGTTCCTTTGGTTA
AAAAACCATTCACAAGAATTGAGCAAAGAGAAAGATATAAGACATTTACATTTCACATAAGAAGTAGAGCAAGGAGAAAGATAAAACATTTACTAAGCTT
AGAAAGCCATTTCGAGTTAACGCAGTCAAAGCTTAATTAATCACCACGTGCGAGTTAACGGAGTCAGAGCTTAATTAATCAGCACGTGCGGACCCGCTTT
GCTGCGTGTGATGCATCCCTCCACCGTACACGTGTCCTTGATGATGATGCCCCATCGTCACAATCCCACCGTACATCCCTCCTCCCGCCGTCGCACCTCC
TCCACCATTGTATCCTCCTCCTCCGCCGCCACTAGCGCTCCCATTTCCTCCAGCTCCACCTTCCTTATCCCCCTGTTTCCCCGTGGTCGTCCTCTCCCCT
TCCACCTCCCTGTACTTCTGCAGGTAAACCTTCAACGGCTCCACGTAATCCTCGAACCCTAGCGTCGTCATCGCCCATAGAAGATCGTCGCCGTTGATCG
TCTTCCTCTTCTCTCTCTGACACTTGTCGGATGCCTCTCCGGTGACGAAGCTTATGAACTCCGATACGCACTCCTGCACCGTCTCCTTCGCTTCCTTGGA
GATTTTGGCGTTCGCCGGCAACGCTTTCTTCATGATCCGACTCACGTTCGCGATCGGGAGAAACCTATCCTGCTCACGCGACGATGAGCTGCCTCCGTCC
TTGTGCCCGCCTGAATCGTTGTCGGAATCCGCCATCTCGGAAACGGCGAACGGTTAATCGGAGGGAGGAGAGAAAGAGAGAGAGTGGTTTGGGTCCGTTG
GAT