Detailed information on CNT30300127


BLAST search results

BLAST vs Swiss-Prot:
sp|P04784|CB21_WHEAT, E-value = 1e-178

BLAST vs NONCODE:
NONMTRT001605, E-value = 6e-26

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30187726Triticum aestivumSecale cereale59.9210094.9628forward
CNT30394300Triticum aestivumTriticum turgidum92.7583.7299.69972forward
CNT30665503Triticum aestivumTriticum dicoccoides93.5110098.98980forward
CNT30139746Triticum aestivumLolium perenne68.877.0385.58721forward
CNT30149365Triticum aestivumBrachypodium distachyon48.5780.4187.82509forward

Expression of CNT30300127

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MAQRQWITSSSRFLAKVSGSADSPAVSHP*

>peptide 2 (32 aa)
MTDSTLLARNKVGGKCPCVVVDRVGEVVSEVL*

>peptide 3 (38 aa)
MPQGRRQGRADQSCRPGRAGQRSHRAVHRQCGSPQRRP*

>peptide 4 (62 aa)
MVTRASPKRNDDGRFFTALPAKAGEESDMVVAAILIDGGSMCSPRMRSGCGDGLRGSGQWAS*

>peptide 5 (66 aa)
MACTKKPNMENIARFSSGPLPVTMACTKKPNMENIARRPFLISLTLSSVNASGSSARPSGSKLPPG*

Sequence

>CNT30300127
TGTCTCTTTTCCAGACAATCGAATCCTCGTAATTTACATCATGGTAGTACAACTTGGACTGCACAATGACTGACTCCACCTTACTTGCCCGGAACAAAGT
TGGTGGCAAATGCCCATGCGTTGTTGTTGACAGGGTCGGAGAGGTGGTCAGCGAGGTTCTCTAGTGGACCCTTGCCGGTGACGATGGCTTGCACAAAGAA
ACCGAACATGGAAAACATAGCGAGGTTCTCTAGTGGACCCTTGCCGGTGACGATGGCTTGCACAAAGAAACCGAACATGGAAAACATAGCGAGGCGACCG
TTCTTGATCTCCTTAACCTTGAGCTCGGTGAATGCCTCAGGGTCGTCGGCAAGGCCGAGCGGATCAAAGCTGCCGCCCGGGTAGAGCGGGTCAACGATCT
CACCGAGCGGTCCACCGGCAATGCGGTAGCCCTCAACGGCGCCCATGAGCACGACCTGACAAGCCCAGATGGCAAGGATACTTTGTGCGTGCACAAGGCT
TGGGTTGCCCAGGTAGTCGAGGCCGCCCTCGCTGAAGATCTGGGATCCAGCCTTGAACCAAACAGCCTCGCCGAACTTCACACCATTGCGGGCGAGAAGC
TCGGGGAAGACGCAACCGAGCGCGCCAAGCATGGCCCAACGGCAGTGGATCACCTCCAGCTCGCGGTTCTTGGCGAAGGTCTCGGGGTCAGCCGACAGCC
CAGCGGTGTCCCACCCATAGTCGCCGGGGAATTCACCGGTCAGATAGCTCGGGGGCTCACCAGAAAGCGGGCCGAGGTAGAGCACGCGGTCAGAGCCGTA
CCACGGGCTGCCGGAGGCAACCTGCTTGGCCTTTGCCGCTGTCTTGCGCATGGTGACGCGAGCCTCCCCGAAAAGAAACGACGATGGCAGGTTCTTCACT
GCCTTGCCGGCAAAGGCTGGGGAAGAGAGTGACATGGTGGTTGCAGCCATTCTGATCGATGGAGGTTCTATGTGTTCTCCAAGAATGAGGAGTGGGTGTG
GAGATGGCTTAAGGGGATCGGGGCAATGGGCTTCTTAAGGCAGTGGAC