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Detailed information on CNT30149365


BLAST search results

BLAST vs Swiss-Prot:
sp|P04784|CB21_WHEAT, E-value = 1e-91

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30300127Brachypodium distachyonTriticum aestivum80.4148.5787.82509forward
CNT30225386Brachypodium distachyonHordeum vulgare92.7388.0183.3587forward
CNT30394768Brachypodium distachyonTriticum turgidum80.4142.6788.02509forward
CNT30440257Brachypodium distachyonAegilops tauschii76.7877.2786.21486forward
CNT30240130Brachypodium distachyonAvena sativa92.735888.42587forward
CNT30656613Brachypodium distachyonTriticum dicoccoides92.7366.7888.93587forward
CNT30455714Brachypodium distachyonSaccharum spontaneum79.9456.1686.36506forward
CNT3010541Brachypodium distachyonZea mays70.1455.588.06444forward
CNT30345513Brachypodium distachyonEragrostis tef79.9454.5387.75506forward
CNT30582755Brachypodium distachyonEchinochloa crusgalli79.9446.0889.33506forward

Expression of CNT30149365

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MAQRQWITSSSRFLAKVSGSAESPAVSHP*

>peptide 2 (42 aa)
MVMRASPSAGRFFTAFPAKVEEERAMVAVAIDVLLYRALLRV*

>peptide 3 (57 aa)
VKAAAGVERVNDLAERATGNTVSLDGAHENDLAGPNGEDALGMDEARVAEVVKAPPQ*

Sequence

>CNT30149365
GTCAAAGCTGCCGCCGGGGTAGAGAGGGTCAACGATCTCGCCGAGCGGGCCACTGGCAACACGGTATCCCTCGACGGCGCCCATGAGAACGACCTGGCAG
GCCCAAATGGCGAGGATGCTCTGGGCATGGACGAGGCTCGGGTTGCCGAGGTAGTCAAGGCCCCCCCTCAGTGAAGATCTGAGAGCCGGCCTTGAACCAG
ACGGCCTCGCCGAACTGAACACCATTGCGGGCGAGAAGCTCAGGGAAGACGCAACCGAGCGCGCCAAGCATGGCCCAACGACAGTGGATCACCTCAAGCT
CGCGGTTCTTGGCAAAGGTCTCGGGGTCAGCCGAGAGCCCGGCGGTGTCCCACCCGTAATCGCCGGGGAACTCACCGGTCAGGTAGCTCGGGGGTTCGCC
GGAGAGCGGGCCGAGGTACAACACGCGGTCGGAGCCGTACCACGGGCTGCCTGAGGAGACCGGCTTGGCCTTGGCAACGGTCTTGCGCATGGTGATGCGG
GCCTCTCCGAGCGCCGGCAGGTTCTTCACCGCCTTCCCGGCGAAGGTCGAGGAGGAGAGGGCCATGGTGGCGGTCGCCATTGATGTACTGCTGTACCGTG
CTCTCCTAAGAGTGTGAGGCTGGCTCTGGTGTG