CANTATAdb - search

Detailed information on CNT30139746

BLAST search results

BLAST vs Swiss-Prot:
sp|P04784|CB21_WHEAT, E-value = 7e-176

BLAST vs NONCODE:
NONMTRT001605, E-value = 5e-51

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30188610	Lolium perenne	Secale cereale	83.87	75.48	87.26	785	forward
CNT30300127	Lolium perenne	Triticum aestivum	77.03	68.8	85.58	721	forward
CNT30225735	Lolium perenne	Hordeum vulgare	76.82	89.54	88.04	719	forward
CNT30252718	Lolium perenne	Avena sativa	94.66	78.2	91.53	886	forward
CNT30665770	Lolium perenne	Triticum dicoccoides	84.4	82.98	85.44	790	forward

Expression of CNT30139746

Peptides detected in this lncRNA

>peptide 1 (46 aa)
WIVGESRTLHKIIVIYIVVVQTRLHNITVHWADSLLETSVICRGRS*

>peptide 2 (36 aa)
MRASPKSVDDGRFFTNFPAKVEEERDMVVVAIVVVRP

>peptide 3 (32 aa)
MARRPFLSSLTFSSENASGSSAKPRGSKLPPG*

>peptide 4 (29 aa)
MAQRLWITSNSRFFAKVSGSAESPAVSQP*

Sequence

>CNT30139746
TGGATAGTGGGAGAATCTCGCACTTTACATAAAATTATCGTAATTTACATCGTGGTTGTACAAACAAGACTACACAACATCACAGTTCACTGGGCCGATA
GTCTCCTAGAGACTTCAGTTATTTGCCGGGGACGAAGTTAGTGGCGAATGCCCATGCGTTGTTGTTGACCGGGTCAGCAATGTGGTCAGCAAGGTTCTCT
AGTGGGCCCTTGCCGGTGACGATGGCTTGAACAAAGAAGCCAAACATCGAGAACATGGCGAGGCGACCGTTCTTGAGTTCCTTGACCTTTAGCTCGGAAA
ATGCCTCGGGGTCGTCGGCCAAGCCGAGAGGATCAAAGCTGCCACCTGGGTAGAGCGGGTCAATGATCTCACCAAGTGGGCCGCCAGCAACGCGGTATCC
CTCAACGGCACCCATGAGTACAACCTGACAGGCCCATATAGCTAGGATGCTTTGTGCATGGACGAGGCTAGGGTTGCCTAGGTAGTCGAGGCCACCCTCA
CTGAAGATCTGGGAGCCGGCCTTGAACCAGACAGCCTCGCCAAACTTGACGCCATTGCGGGCGAGCAGCTCAGGGAAGACACAACCCAGTGCCCCGAGCA
TGGCCCAGCGACTGTGGATCACCTCCAACTCCCGGTTCTTCGCGAAAGTCTCGGGGTCGGCAGAAAGTCCAGCGGTGTCCCAGCCATAGTCACCTGGGAA
CTCACCAGTCAGATAGCTCGGGGGCTCACCGGAGAGCGGGCCGAGGTAGAGCACGCGGTCGGCGCCATACCATGGGCTACCAGAGGAGACCTGCTTAGCC
TTTGCTGCAGTCTTGCGCATTGTAATGCGGGCCTCGCCGAAAAGTGTGGACGATGGCAGATTCTTCACTAACTTTCCAGCAAAGGTAGAGGAGGAGAGAG
ACATGGTAGTTGTCGCCATTGTAGTGGTAAGACCGG