Detailed information on CNT30553522


BLAST search results

BLAST vs Swiss-Prot:
sp|P25777|ORYB_ORYSJ, E-value = 3e-67

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30287698Oryza glaberrimaTriticum aestivum55.5247.5284.08201forward
CNT3017169Oryza glaberrimaZea mays23.7629.2588.3786forward
CNT30575980Oryza glaberrimaOryza barthii26.2446.1282.1195forward
CNT30603971Oryza glaberrimaOryza punctata26.246.0683.1695forward

Expression of CNT30553522

Peptides detected in this lncRNA

>peptide 1 (59 aa)
ADRVVRRAAAGMILAAGAARWAREVIIADMVRGGWGRWCWRSWRSRRWLGWVCSALGRV*

>peptide 2 (56 aa)
RQGSQAGSSWHDPCSRCCPLGKRSYHRRHGQGRMGEVVLEELEESEMAWVGLLRSW*

>peptide 3 (34 aa)
MAMPHFPVVTLILRSMRTYPDSPHFGPQELRTIQ*

Sequence

>CNT30553522
GCAGACAGGGTAGTCAGGCGGGCAGCAGCTGGCATGATCCTTGCAGCAGGTGCTGCCCGCTGGGCAAGAGAAGTTATCATCGCAGACATGGTCAGGGGCG
GATGGGGGAGGTGGTGTTGGAGGAGTTGGAGGAGTCGGAGATGGCTTGGGTGGGTTTGCTCCGCTCTTGGTAGGGTATGATGCCATCATGGCAATGCCAC
ACTTCCCCGTGGTTACATTGATATTGCGCTCCATGCGAACGTATCCAGACTCACCCCACTTCGGGCCCCAAGAGTTGCGGACAATCCAGTAGTCTTTGCC
ATTGTCAGTGCCATAACCGACGGCAACCACACCATGGTCAAGGCTTGTGCCACACCTACCGC