Detailed information on CNT3017169


BLAST search results

BLAST vs Swiss-Prot:
sp|P25777|ORYB_ORYSJ, E-value = 7e-45

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30287698Zea maysTriticum aestivum85.7159.5780.56252forward
CNT30553522Zea maysOryza glaberrima29.2523.7688.3786forward

Expression of CNT3017169

Peptides detected in this lncRNA

>peptide 1 (97 aa)
VARRAAAGVILAAAGAARGAREVLVADIVRGSRRCWRGWRRPGRVRALLRRVGRHHRDPALPSAGVDVPLHTDVTSLAPLRAPRVADDPVVLPVLGAV

>peptide 2 (65 aa)
SPAGSSWRDPCSSRCCPRSTRSSRRRHCQGQPAVLAGLETAWEGSRPSSSGRTPSSRSRTSQCWR*

Sequence

>CNT3017169
GTAGCCCGGCGGGCAGCAGCTGGCGTGATCCTTGCAGCAGCAGGTGCTGCCCGCGGAGCACGAGAAGTTCTCGTCGCAGACATTGTCAGGGGCAGCCGGC
GGTGTTGGCGGGGTTGGAGACGGCCTGGGAGGGTTCGCGCCCTTCTTCGTCGGGTAGGACGCCATCATCGCGATCCCGCACTTCCCAGTGCTGGCGTTGA
CGTTCCTCTCCATACGGATGTAACCAGCCTCGCCCCACTTCGGGCCCCACGAGTTGCGGACGATCCAGTAGTCCTTCCCGTTCTCGGCGCCGTA