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Detailed information on CNT30287494


BLAST search results

BLAST vs Swiss-Prot:
sp|Q19VB1|RK16_CHLAT, E-value = 3e-09

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30183531Triticum aestivumSecale cereale40.8989.9392375forward
CNT30385899Triticum aestivumTriticum turgidum85.3984.2899.74783forward
CNT30435180Triticum aestivumAegilops tauschii39.2615.4895.56360forward
CNT30657929Triticum aestivumTriticum dicoccoides83.5385.1199.74766forward
CNT30720303Triticum aestivumTriticum spelta34.7966.05100319forward

Expression of CNT30287494

Peptides detected in this lncRNA

>peptide 1 (73 aa)
ERDGCSHLVFFSLSPEDERRVAAQPSPSSLPRSAAQHAPPPLPPVDGHWTFRRLTLSKTKLVFSSEADLDLAF*

>peptide 2 (69 aa)
QKEMAVRIWSSSPSLLKMSAASPPNPLPPPFPDLRPNTPRLLSPLLMDTGPSVVLPCPRPNSSSHLKPI*

Sequence

>CNT30287494
CAGAAAGAGATGGCTGTTCGCATTTGGTCTTCTTCTCCCTCTCTCCTGAAGATGAGCGCCGCGTCGCCGCCCAACCCTCTCCCTCCTCCCTTCCCAGATC
TGCGGCCCAACACGCCCCGCCTCCTCTCCCCCCTGTTGATGGACACTGGACCTTCCGTCGTCTTACCCTGTCCAAGACCAAACTCGTCTTCTCATCTGAA
GCCGATCTAGATCTTGCTTTCTGACCGGTTCCCAGGCGGGCGTCCCTCTGCTTCCTGTCCTTGCACTTTGACGGGTACCCAGGTGCGTGTCCCTGTTCTT
TTGCTCCGACGGCCAGCTGCCCAGAAGTTCCCCTGCTTCCTCTTCGATTGGCAGCCAAACGGCACATAACTGCGAGCATGGTAGCGTGTGAAGGTACAAG
ACGGTCTTTGCAAGACATCAGGCTCTGCTCCAGCTATTGATATCCATTTTCAGCACTTGAACCCGCTTGGATCACGGCAAGACAGATAGAAGCAGGATGA
AGAGCAATAACATGATATGCATGTCGTGGTGGAAAAATATGGGAACATATTCTTACGGGTGGTCATGGTCTGCTGGTTGATGGGCACAAACAAGTAATTG
AGGCTCTCGCTCAAGGTCTTAATCAGAGTTGTAGATATTGTAGATACTTGGCCTGACCAACTCAAGGTCTTGACACCCCTCTTAATCAGAGGTGTAAATA
TTTTGCCTTACTAGAGTAGCAGATAATTGTCCTGACCAACAACACATGTACATGCTGACTTAGGTGTTCTGCTAGCTGTACGAAACATTAGCTATGTTTA
CTTGAATTCTGGCTTGAAATTGACCATGAGTCTGTAATTGAACAAGAATCTGATGTGTACATTGAATTTTAGCAGCAATTTATAATTTTGAATTATGGCA
CAGAATTTAATTATTGG