Detailed information on CNT30720303


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30179114Triticum speltaSecale cereale54.247.6595.04262forward
CNT30287494Triticum speltaTriticum aestivum66.0534.79100319forward
CNT30385899Triticum speltaTriticum turgidum66.0534.3499.69319forward
CNT30435180Triticum speltaAegilops tauschii54.6611.3594.32264forward
CNT30657929Triticum speltaTriticum dicoccoides66.0535.4499.69319forward

Expression of CNT30720303

SRR9114152: 1.25 RPKM

Peptides detected in this lncRNA

>peptide 1 (53 aa)
VAAQPSPSSLPRSAAQHAPPPLPPVDGHWTFRRLTLSKTKLVFSSEADLDLAF*

>peptide 2 (48 aa)
SPPNPLPPPFPDLRPNTPRLLSPLLMDTGPSVVLPCPRPNSSSHLKPI*

Sequence

>CNT30720303
GTCGCCGCCCAACCCTCTCCCTCCTCCCTTCCCAGATCTGCGGCCCAACACGCCCCGCCTCCTCTCCCCCCTGTTGATGGACACTGGACCTTCCGTCGTC
TTACCCTGTCCAAGACCAAACTCGTCTTCTCATCTGAAGCCGATCTAGATCTTGCTTTCTGACCGGTTCCCAGGCGGGCGTCCCTCTGCTTCCTGTCCTT
GCACTTTGACGGGTACCCAGGTGCGTGTCCCTGTTCTTTTGCTCCGACGGCCAGCTGCCCAGAAGTTCCCCTGCTTCCTCTTCGATTGGCAGCCAAACGG
CACATAACTGCGAGCATGGTAGCGTGTGAAGGTACAAGACGGTCTTTGCAAGACATCAGGCTCTGCTCCAGCTATTGATATCCATTTTCAGGTGAAAAGA
AATGTCAAGATGGTAATTAGTATCCAAGGTTATGTTTTGGGGAACAATTTGTTATCAAAAACATCTCTGCTAAATTTGTGATC