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Detailed information on CNT30385899


BLAST search results

BLAST vs Swiss-Prot:
sp|Q19VB1|RK16_CHLAT, E-value = 6e-10

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3048584Triticum turgidumPrunus dulcis9.4727.3384.0988reverse complement
CNT30183531Triticum turgidumSecale cereale40.3789.9392375forward
CNT30287494Triticum turgidumTriticum aestivum84.2885.3999.74783forward
CNT30435180Triticum turgidumAegilops tauschii38.7515.4895.56360forward
CNT30657929Triticum turgidumTriticum dicoccoides82.4585.11100766forward
CNT30720303Triticum turgidumTriticum spelta34.3466.0599.69319forward

Expression of CNT30385899

Peptides detected in this lncRNA

>peptide 1 (66 aa)
MAVRIWSSSPSLLKMSAASPPNPLPPPFPDLRPNTPRLLSPLLMDTGPSVVLPCPRPNSSSHLKPI*

>peptide 2 (77 aa)
VRRAERDGCSHLVFFSLSPEDERRVAAQPSPSSLPRSAAQHAPPPLPPVDGHWTFRRLTLSKTKLVFSSEADLDLAL*

Sequence

>CNT30385899
GTGAGAAGGGCAGAAAGAGATGGCTGTTCGCATTTGGTCTTCTTCTCCCTCTCTCCTGAAGATGAGCGCCGCGTCGCCGCCCAACCCTCTCCCTCCTCCC
TTCCCAGATCTGCGGCCCAACACGCCCCGCCTCCTCTCCCCCCTGTTGATGGACACTGGACCTTCCGTCGTCTTACCCTGTCCAAGACCAAACTCGTCTT
CTCATCTGAAGCCGATCTAGATCTTGCTCTCTGACCGGTTCCCAGGCGGGCGTCCCTCTGCTTCCTGTCCTTGCACTTTGACGGGTACCCAGGTGCGTGT
CCCTGTTCTTTTGCTCCGACGGCCAGCTGCCCAGAAGTTCCCCTGCTTCCTCTTCGATTGGCAGCCAAACGGCACATAACTGCGAGCATGGTAGCGTGTG
AAGGTACAAGACGGTCTTTGCAAGACATCAGGCTCTGCTCCAGCTATTGATATCCATTTTCAGCACTTGAACCCGCTTGGATCACGGCAAGACAGATAGA
AGCAGGATGAAGAGCAATAACATGATATGCACGTCGTGGTGGAAAAATATGGGAACATATTCTTACGGGTGGTCATGGTCTGCTGGTTGATGGGCACAAA
CAAGTAATTGAGGCTCTCGCTCAAGGTCTTAATCAGAGTTGTAGATATTGTAGATACTTGGCCTGACCAACTCAAGGTCTTGACACCCCTCTTAATCAGA
GGTGTAAATATTTTGCCTTACTAGAGTAGCAGATAATTGTCCTGACCAACAACACATGTACATGCTGACTTAGGTGTTCTGCTAGCTGTACGAAACATTA
GCTATGTTTACTTGAATTCTGGCTTGAAATTGACCATGAGTCTGTAATTGAACAAGAATCTGATGTGTACATTGAATTTTAGCAGCAATTTATAATTTTG
AATTATGGCACAGAATTTAATTATTGGAA