CANTATAdb - search

Detailed information on CNT30261562

BLAST search results

BLAST vs Swiss-Prot:
sp|P13851|CB21_SINAL, E-value = 6e-92

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT3019671	Brassica rapa	Citrullus lanatus	15.55	22.57	88.6	114	forward
CNT30538628	Brassica rapa	Brassica napus	59.21	79.93	90.32	434	forward
CNT30235137	Brassica rapa	Brassica oleracea	38.61	43.88	89.4	283	forward
CNT3060679	Brassica rapa	Arabidopsis lyrata	44.34	54.17	89.54	325	forward
CNT3078263	Brassica rapa	Brassica juncea	61.39	57.84	88	450	forward
CNT30611567	Brassica rapa	Arabis alpina	15.69	29.72	88.7	115	forward

Expression of CNT30261562

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MAQRVEATTWIQQVLCFSQWSVPSDSVTLNSSHEDHLSSPNG*

>peptide 2 (42 aa)
MVTRPVPNTSEAPGESFTAFPAKAGEERAIVDAAIAVRVWCK*

Sequence

>CNT30261562
TTTGATGTAAGCAATATTAATCTTGCACACTGGTTGTTGATCCATCAATATCATCAAATTTGTAATAAATATTTCATAACATTTTAAGCTTTTACATCAC
ATTCAAGATTTAACAAACCGGATACACACAACACGATCACCAATTAAACTCACTTTCCAGGGACGAAGTTGGTAGCAAAGGCCCATGCGTTGTTGTTGAC
TGGATCAGCCAAATGGCCCAACGGGTCGAAGCTACCACCTGGATACAGCAAGTCCTCTGCTTCTCCCAATGGTCCGTCCCCAGCGACTCTGTAACCCTCA
ACAGCTCCCATGAGGATCACCTGAGTAGCCCAAATGGCTAAGATGCTCTGAGCGTGGACCAAGCTCGGCTCACGGTTTCTTGCAAAAGTCTCGGGGTCAG
CGGATAGACCAGCGGTGTCCCATCCGTAGTCACCGGGGAAGCCAGGGAACTCTCCGGTGAGGTAGCTCGGGGGCTCTCCGGAGAATGGACCCAAGTACTT
GACCCTGTCGGATCCGTACCATGGGCTGCCTGATGGACCAGTGGGTTTGACGGTTTTACGCATGGTGACACGGCCGGTTCCAAACACCTCGGAGGCTCCT
GGTGAGAGCTTCACGGCCTTCCCGGCCAAAGCGGGAGAGGAGAGAGCCATTGTAGATGCGGCCATTGCTGTTAGAGTGTGGTGCAAGTAAAAGGTTTTTA
GATAACTTGATGAATTGGATGGTTTGGTTACGG