CANTATAdb - search

Detailed information on CNT30538628

BLAST search results

BLAST vs Swiss-Prot:
sp|P13851|CB21_SINAL, E-value = 1e-109

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30503705	Brassica napus	Nicotiana attenuata	36.46	40.57	83.33	198	forward
CNT3078263	Brassica napus	Brassica juncea	96.32	67.22	91.78	523	forward
CNT30261562	Brassica napus	Brassica rapa	79.93	59.21	90.32	434	forward

Expression of CNT30538628

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MVTRPVPKTSEAPGESFTAFPVKAGEDRAMVEAAIRNFLDLF*

>peptide 2 (60 aa)
SVLDLLHLQLRESFWVGSKTQRVKAASWVEQVLCFPQWSFSGDSVTFNSSHEDHLSSPNG*

>peptide 3 (31 aa)
MAKMLCAWTKLGSRFLAKVSGSAERPAVSHP*

Sequence

>CNT30538628
TTCCGTTCTTGATCTCCTTCACCTTCAACTCCGCGAAAGCTTCTGGGTCGGTAGCAAGACCCAACGGGTCAAAGCTGCCTCCTGGGTAGAGCAAGTCCTC
TGCTTCCCCCAATGGTCCTTCTCCGGCGACTCTGTAACCTTCAACAGCTCCCATGAGGATCACCTGAGTAGCCCAAATGGCTAAGATGCTCTGTGCGTGG
ACCAAGCTCGGCTCACGGTTCCTGGCGAAGGTCTCGGGGTCAGCGGAAAGACCGGCGGTGTCCCATCCGTAGTCACCGGGGAACTCTCCTGTGAGGTAGC
TTGGGGGCTCTCCGGAGAATGGACCCAAGTACTTGACCCTGTCGGATCCGTACCATGGGCTGCCAGATGGACCGGTGGGTTTGACGGTTTTTCTCATGGT
GACACGGCCGGTTCCAAAGACCTCTGAGGCTCCCGGTGAGAGCTTCACGGCCTTTCCGGTAAAGGCAGGGGAGGACAGAGCCATGGTTGAGGCAGCCATT
AGAAATTTTCTTGATCTTTTTTAGTTTTTGTGTTTTTTTTTTT