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Detailed information on CNT3078263

BLAST search results

BLAST vs Swiss-Prot:
sp|P14584|CB21_RAPSA, E-value = 2e-78

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30315988	Brassica juncea	Corylus avellana	30.59	56.67	86.55	238	forward
CNT30548768	Brassica juncea	Ipomoea triloba	30.08	63.07	85.47	234	forward
CNT30514020	Brassica juncea	Juglans regia	30.08	26.44	84.62	234	forward
CNT30269346	Brassica juncea	Chenopodium quinoa	25.06	25.03	87.18	195	forward
CNT30525058	Brassica juncea	Phaseolus vulgaris	30.59	46.12	86.55	238	forward
CNT30709679	Brassica juncea	Glycine max	30.46	27.78	88.19	237	forward
CNT30123772	Brassica juncea	Physcomitrium patens	22.62	41.12	85.8	176	forward
CNT30538628	Brassica juncea	Brassica napus	67.22	96.32	91.78	523	forward
CNT30235137	Brassica juncea	Brassica oleracea	40.23	48.53	94.89	313	forward
CNT30171121	Brassica juncea	Trifolium pratense	25.45	22.55	88.38	198	forward
CNT3060679	Brassica juncea	Arabidopsis lyrata	73.39	95.17	86.51	571	forward
CNT30261562	Brassica juncea	Brassica rapa	57.84	61.39	88	450	forward
CNT30610069	Brassica juncea	Gossypium raimondii	30.08	53.06	85.9	234	forward
CNT30176337	Brassica juncea	Vigna angularis	30.72	23.57	87.45	239	forward

Expression of CNT3078263

Peptides detected in this lncRNA

>peptide 1 (88 aa)
MVGEILQRSLSGDNSLNKESKHREHSQPSVLDLLHLQLGESFWVGSKAQWVKAASWVKQVLCFSQRSLSSDSVTLNSSHEDNLSGPNG*

>peptide 2 (49 aa)
MVTRPVPKTSDAPGESFTAFPAKAGEDRAMVEAAIRTFLLILCFFFLVTG

>peptide 3 (30 aa)
MGQSCLLGKASPLLLPTVPLQRLCNPQQLP*

>peptide 4 (29 aa)
MLLVRASRPFRRRQGRTEPWLRQPLELFC*

Sequence

>CNT3078263
TTTACATAGGAAAGATCACAAACAAACTCTCTTTCTCCGGCTCTCACTCACATTACAATAAGCTTTAACTCGCTCACTTTCCGGGGACGAAGTTGGTGGC
GAAGGCCCATGCGTTGTTGTTGACTGGGTCAGCCAAATGGTCGGCGAGATTCTCCAACGGTCCCTTTCCGGTGACAATAGCCTGAACAAAGAATCCAAAC
ATAGAGAACATAGCCAACCTTCCGTTCTTGATCTCCTTCACCTTCAACTCGGCGAAAGCTTCTGGGTCGGTAGCAAGGCCCAATGGGTCAAAGCTGCCTC
CTGGGTAAAGCAAGTCCTCTGCTTCTCCCAACGGTCCCTCTCCAGCGACTCTGTAACCCTCAACAGCTCCCATGAGGATAACCTGAGTGGCCCAAATGGC
TAAGATGCTCTGAGCGTGGACCAAGCTCGGTGGATAACTTCTAGCTCACGGTTCCTGGCGAAGGTCTCGGGGTCAGCGGATAGACCAGCGGTGTCCCATC
CGTAGTCACCGGGGAACTCTCCGGTAAGGTAGCTCGGGGGCTCGCCGGAGAATGGACCCAAGTACTTAACCCTGTCGGATCCGTACCATGGGCTGCCAGA
TGAACCGGTGGGTTTGACGGTTTTGCGCATGGTGACACGGCCGGTTCCAAAGACTTCGGATGCTCCTGGTGAGAGCTTCACGGCCTTTCCGGCGAAGGCA
GGGGAGGACAGAGCCATGGTTGAGGCAGCCATTAGAACTTTTTTGTTGATTTTATGTTTTTTTTTTTTGGTGACTGGT