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Detailed information on CNT30235137


BLAST search results

BLAST vs Swiss-Prot:
sp|P13851|CB21_SINAL, E-value = 7e-83

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30538981Brassica oleraceaBrassica napus84.8194.6495.98547forward
CNT3078263Brassica oleraceaBrassica juncea48.5340.2394.89313forward
CNT30261562Brassica oleraceaBrassica rapa43.8838.6189.4283forward

Expression of CNT30235137

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MIINLLTPSLSGDEVGGKGPCIVVDWISQMFRENTA*

>peptide 2 (29 aa)
MAHLQWITSSSRFLAKVSGSAERPAVSHP*

>peptide 3 (42 aa)
MVTRPVPKTSEAPGESFTAFPAKAGEDRAMVEAAIRNFLDLF*

Sequence

>CNT30235137
TGTTGAGAAATGATAATTCAGTTCAATTTGAGTAATAAGATAAAACGCCAACACAGTTGAGAAAAAGAGGTTCGGTTTCTGATAAAATCATACAAAGATA
CGACAAAGGAAGTTTCACAAATATACAAACAAACTCTCTTTCTCTTCTGCTCACTCGCATGATAATTAACCTTTTAACTCCTTCACTTTCCGGGGACGAA
GTTGGTGGCAAAGGCCCATGCATTGTTGTTGACTGGATCAGCCAAATGTTCAGGGAAAACACAGCCTAGGGCTCCAAGCATGGCCCATCTGCAGTGGATA
ACTTCTAGCTCACGGTTCCTGGCGAAGGTCTCGGGGTCAGCGGAAAGACCGGCGGTGTCCCATCCGTAGTCACCGGGGAACTCTCCTGTGAGGTAGCTTG
GGGGCTCTCCGGAGAATGGACCCAAGTACTTGACCCTGTCGGATCCGTACCATGGGCTGCCAGATGGACCGGTGGGTTTGACGGTTTTTCTCATGGTGAC
ACGGCCGGTTCCAAAGACCTCTGAGGCTCCCGGTGAGAGCTTCACGGCCTTTCCGGCAAAGGCAGGGGAGGACAGAGCCATGGTTGAGGCAGCCATTAGA
AATTTTCTTGATCTTTTTTAGTTTTTGTGTTTTTTTTTGTGACTG