Detailed information on CNT3019671


BLAST search results

BLAST vs Swiss-Prot:
sp|P12333|CB2A_SPIOL, E-value = 3e-80

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30272386Citrullus lanatusChenopodium quinoa30.123.0382.24152forward
CNT30404250Citrullus lanatusBeta vulgaris28.9114.2384.25146forward
CNT30543164Citrullus lanatusBrassica napus33.2733.684.52168forward
CNT3060679Citrullus lanatusArabidopsis lyrata23.762089.17120forward
CNT30261562Citrullus lanatusBrassica rapa22.5715.5588.6114forward
CNT3036845Citrullus lanatusCucumis melo35.2542.2892.13178forward

Expression of CNT3019671

Peptides detected in this lncRNA

>peptide 1 (33 aa)
SKPQWIKAPTWVNRVSNFPQWPPRNSIPFNRTH*

>peptide 2 (28 aa)
MGRREPLMKLPFFLSVSLFWGFWFREFGE

>peptide 3 (49 aa)
MGLGFPAVFLMVMRPSPRRSEVVGDNLTAWPARDGEERAIDEAAIFSFC*

>peptide 4 (73 aa)
MAPPQFYTLQPHPLAQLDKPKWLKCSERGPGSAHGFSRKFPGRRINRRCPSRNRRGILQSNKKGARQRMGLGI*

Sequence

>CNT3019671
CAGCAAGCCCCAATGGATCAAAGCTCCCACCTGGGTAAATCGGGTCAGTAATTTCCCCCAATGGCCCCCCCGCAATTCTATACCCTTCAACCGCACCCAT
TAGCACAACTTGACAAGCCCAAATGGCTAAAATGCTCTGAGCGTGGACCAGGCTCGGCTCACGGTTTTTCGCGAAAGTTTCCGGGTCGGCGGATAAACCG
GCGGTGTCCCAGCCGTAATCGCCGGGGAATTCTCCAGTCAAATAAGAAGGGGGCTCGCCAGAGAATGGGCCTAGGTATTTGACGCGATCTGGGCCGTACC
ATGGGCTTCCGGAGGAAATGGGCTTGGGCTTTCCGGCAGTTTTTCTCATGGTGATGCGACCGTCGCCCAGGAGGTCGGAGGTCGTGGGGGATAATTTGAC
GGCTTGGCCGGCGAGAGATGGGGAGGAGAGAGCCATTGATGAAGCTGCCATTTTTTCTTTCTGTTAGCTTGTTTTGGGGATTCTGGTTTAGGGAGTTTGG
AGAGA