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Detailed information on CNT3082092


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SY97|LHCA3_ARATH, E-value = 2e-62

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30233604Brassica junceaBrassica oleracea96.3977.1794.08507forward

Expression of CNT3082092

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MSLQVESHRFGTREEQCLLESDRPFLESQVQ*

>peptide 2 (37 aa)
LFFMAIDIVISYKRRICLHRVLQHKEAGGTKEKETRL*

>peptide 3 (39 aa)
MFTQGVTTQRSWWYQRERNKIVGYMRMGYQHKTPWDDMI*

>peptide 4 (46 aa)
CSLWPLTLSFLTKDEYVYTGCYNTKKLVVPKRKKQDCRIHENGIPT*

Sequence

>CNT3082092
GCTGTTCTTTATGGCCATTGACATTGTCATTTCTTACAAAAGACGAATATGTTTACACAGGGTGTTACAACACAAAGAAGCTGGTGGTACCAAAGAGAAA
GAAACAAGATTGTAGGATACATGAGAATGGGATACCAACATAAAACACCATGGGATGATATGATATGATCATCTCAGTGGAACTTGAGGCTGGTCAAGAC
ATTGTTGTTGACGGGATCCGCCAAATGATCAAGTAGGTTCTGGTAAGCCATCTCGAGAACAAAGAGTGTGTAAGGGTCTGCCCAGTAGCTGTATGTCCCT
GCAGGTGGAATCACACCGGTTTGGAACCAGGGAAGAGCAGTGTCTGCTGGAATCAGACCGGCCTTTCCTAGAATCTCAGGTGCAATAGCTCCAGCTGCAC
CCAACATAGCAAACCGCCCGTTGATGATCTCTCCGTAGGCTAACCATCTCGGCTCGATGAACCCTCCAGTACCCTCTGGGTCTGAAAGACCAAGCGGGTC
GAATCCAAAGTCGCCAGGTAAGCTGC