Detailed information on CNT30671670


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695034Setaria viridisOryza sativa20.9511.8597.3375forward
CNT30133575Setaria viridisLolium perenne20.9511.7997.3375forward
CNT30229777Setaria viridisAnanas comosus20.119.8193.0672forward
CNT30102551Setaria viridisOryza rufipogon20.958.197.3375forward
CNT30117066Setaria viridisOryza nivara20.951197.3375forward

Expression of CNT30671670

Peptides detected in this lncRNA

>peptide 1 (47 aa)
TSECINSSLVHILQITSPHQQALLINETSINKLSDPSSHHTLSLITK*

Sequence

>CNT30671670
ACAAGTGAATGCATTAATTCATCACTGGTTCATATATTACAAATCACAAGTCCCCATCAGCAAGCTCTCCTAATTAACGAGACCTCCATTAACAAACTAT
CGGATCCATCTTCCCACCATACCCTCTCACTCATCACAAAATGATATCACGCACGCATGGGTTCATCCATCTCCGCCAGCTGATAGAGATCACAGTTAAT
TAATTCAAGAACACGTTTCGATCGATGGACGACGGAGCAATGGCGGCTTAAGAGGATCCTCCGAACGTGTCGAAGATGGTGGTGTGGAGCGGGTCGCTGA
GGTGGGTGGCCCAGTTGTTGAGCGGGCCCTTGCCGGTGGCGACCATGGCGAGGCGCGC