Detailed information on CNT30300691


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30224033Triticum aestivumHordeum vulgare30.3661.2694.85272forward
CNT30394114Triticum aestivumTriticum turgidum26.3471.396.61236forward
CNT30591239Triticum aestivumMusa acuminata20.4265.3684.7183forward
CNT30685421Triticum aestivumTriticum urartu25.5696.2299.13229forward
CNT30347973Triticum aestivumEragrostis tef15.2925.1895.62137forward

Expression of CNT30300691

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MFPPAVEVGRGGEAGEPRPLGLDGDVAACGLGEADAAGVAQEPGARR*

>peptide 2 (75 aa)
MCAASCMKRIMCYCYVPTCRRGRQGRGGRGATTPWPGRRRRGVWTWRGRRGRSRPGTGGSTLTPLAGERPRERGH*

>peptide 3 (83 aa)
MGRPAPSPCSRGWGRRRSRSPCRRRTTRARSGAPPWSAPPGSASPPPPASPTARSPAPPARTTAGPPGPPPAPAGRNHCHPPS*

>peptide 4 (37 aa)
MGESTRRKFHHRSFKITTHFCTVHLLLHTLYILSTPK*

>peptide 5 (32 aa)
MFRITRMGDITSTASIGSHGRIHKKKVSPPEL*

Sequence

>CNT30300691
TCACAGTTAATTCGAGACTAATGCTTCAAACTAGTAGTATGTTTTGCCATGTTTAGAATAACACGCATGGGTGATATTACAAGTACAGCCTCCATCGGAA
GCCATGGGCGAATCCACAAGAAGAAAGTTTCACCACCGGAGCTTTAAGATTACAACACATTTTTGCACTGTCCACCTACTCCTCCACACTTTGTACATCC
TCAGTACCCCAAAATAACAATTCAGACCACCTGAAACCTCCCCGGTCGGTGAAATCGACGGATTTACTGGCCGGAGATGGTCTGGATGATGGTGGTGTGC
CATGGGTCGGCCAGCTCCTTCTCCTTGTTCTCGAGGGTGGGGGAGGAGGCGAAGTAGGTCTCCTTGCCGGCGTCGTACCACTCGGGCGCGTTCAGGAGCC
CCGCCTTGGTCAGCACCTCCGGGATCAGCATCCCCGCCACCCCCAGCATCGCCCACCGCCCGTTCACCAGCTCCGCCTGCACGAACCACCGCAGGTCCTC
CGGGTCCTCCGCCAGCGCCAGCGGGTCGAAACCATTGTCACCCGCCAAGCTGAACGATCCATCCAACAAAGAGTATTAGCATACAAGTATGTGCGCTGCA
TCTTGCATGAAGCGCATCATGTGTTATTGTTATGTTCCCACCTGCCGTCGAGGTAGGCAGGGGAGGGGAGGCCGGGGAGCCACGACCCCTTGGCCTGGAC
GGCGACGTCGCGGCGTGTGGACTTGGCGAGGCCGACGCGGCCGGAGTCGCCCAGGAACCGGGGGCTCGACGCTGACGCCGCTGGCCGGAGAGCGGCCACG
GGAGCGCGGGCACTGACTGACGACATCTTGTCTAGAGAGCAGGTACGGCGCACCGCGGCAGGAGAGTGAGAGTGCGTCGGTGTGTGTGGTGGTTCT