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Detailed information on CNT30465257


BLAST search results

BLAST vs Swiss-Prot:
sp|P32957|CYSP4_VASCU, E-value = 1e-05

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30221493Saccharum spontaneumHordeum vulgare26.8599.687.45247forward

Expression of CNT30465257

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MIDMSAAAASDTSSSSSAAAAASDVVEAPISAALQEGELAS*

>peptide 2 (35 aa)
MNRMPRETGDQLERETVTRAVTKVVSKRLISGIMK*

Sequence

>CNT30465257
CCAATACGTCATCAATATCATTGTTTAATCCTGCACATCAATAAAATTAAAAAAGGCAGCCAAGTAACAACAACAGACTTATAAAATCAAAAGAGTGAAA
GCTACCCACAATAGAGTGGAAAATATCTTTATGGGCGTAGCATATTTTATTTAAGAGAAGAAATTTGTGGTGATGAATAGGATGCCGAGGGAGACAGGCG
ACCAATTGGAACGTGAAACGGTGACAAGAGCCGTGACAAAAGTCGTTTCCAAGAGGCTAATATCTGGAATCATGAAGTGAGCTTGTCCAGAGGAGAAAAG
GAGCTTATTGGTCCAACCACCTTGTCAGCTAGACAGCGACTGCTATTAGTGTAGTCATATTTTTTCTTGGTGGTGCCTTCCAGCAGGGTCACTGGACTCA
GCCTCACTGGAGTTCACAAGGACCAAGGTGATCTCACCGCAGCTGCCCTGGTCCTTGACCTCCGCGACGGCGCCCTTGGTTCTCCAATCAACGGACTCCG
GCAGCTCCACGTTGTCGTCGGCGTGGTACCTGGCGCTGAGCTTCCTCTCCCTCTGCGGCTTGGTCCTGACGCCGAGGTAGGTGGCGCGGTACTCCTCGTT
GGTGAGGTCGGCGAAGCGGTTGTCCCTGAACACCTGGTACCGCCTCTCCTCCTCGCCGATGGCGTTGTAGGTCCGGCCGTGCGCCGCCATCCACTCCGCG
TACATCCGCCGCGTCTCCTCCTCGCTCCGCTCCCCGTAGGAGATGATCGACATGTCCGCCGCCGCGGCGAGCGACACGAGCAGCAGCAGCAGCGCCGCCG
CCGCCGCCAGCGACGTAGTGGAGGCGCCCATCTCCGCCGCGCTACAGGAAGGCGAGCTAGCTAGCTAGGAAGAGGAGGGAGCAGATGGATGGATGAGAGG
ATGACAGGAGGCTGGAGGTC