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Detailed information on CNT30453194


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7GCM7|XIP1_ORYSJ, E-value = 8e-50

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30221338Saccharum spontaneumHordeum vulgare27.4775.7488.67256forward

Expression of CNT30453194

Peptides detected in this lncRNA

>peptide 1 (28 aa)
MESDTGTPTNWQCLMSSPMPAIGWPDRSR

>peptide 2 (73 aa)
MEYKLQDLITFITDTNFKTFKLFIYLFITLFLLAKCKHTTHHHSDDCILFYRYSSTTMLVGKKLVVDRDRQKQ*

>peptide 3 (51 aa)
MLCLASSSASTSYRSAAALPCSRNRSTPSSHASPKGRCTPGLDPPKKAFQR*

Sequence

>CNT30453194
AAAAATTTAAAATTGTATTCTTTTTAGACAGATGGAGTACAAATTACAAGATCTAATTACGTTCATCACTGACACAAACTTCAAAACTTTTAAACTGTTT
ATTTATTTATTCATCACTTTATTCCTTCTTGCGAAATGCAAACACACTACACACCACCACAGTGATGACTGTATTTTATTTTACAGATATAGTAGTACTA
CTATGCTGGTCGGGAAGAAACTAGTGGTTGACAGGGACAGACAGAAACAGTAGTGATGCTGACGCAGCATGCATGTCTGAACTGAGAAATCATCAAGCAT
AGTACTTGACCATGCTTGTGTAGTTGGAGAGCTTGTCAGCGTAGCGGTCCCAGATCATGAACCCTCCGTAGTTGTCTGCCTTCTGCACGGACGGCGCGAC
GTCGTAGTAGACGTTCTTGGGGTGCACCCAGCCGTGCGTCATCTCCGACGCCGTCAACCCCACATAGAACCTGGTGCCAGTACGCCTCGCAGTCGGCGTC
GTCGTAGATCCTGACGTGGACGCGCTCGAAGATCCCCGTGTCCAGCGCCCTCTTCAGGTAGCCCGCCGGCGGGAACCCGCAGCCCGGCGTCGCCGTCAGG
TGCAGCGGCTTCCCGGGCCCGCCGCGGATGTTGTGCTTGGCGAGCTCCAGCGCCAGCACGTCGTACCGGTCCGCCGCCGCGCTGCCGTGCTCCAGGAACA
GGTCGACGCCGTCCAGCCACGCGTCGCCGAAGGGGCGGTGCACGCCCGGCTTGGACCCGCCGAAGAAGGCGTTCCAGAGGTAGTCGAAGAGGTCCAGCGC
CGCTTTTTTGGAGGGGAGAGAGTAGCCGGAGCCGAAGCCGCCGATGGAGAGCGACACCGGGACGCCCACGAACTGGCAGTGCTTGATGTCGTCGCCGATG
CCAGCGATCGGGTGGCCCGACAGGTCCAGGTG