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Detailed information on CNT3021538


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30549577Citrullus lanatusIpomoea triloba13.8822.0792.4179reverse complement
CNT30376000Citrullus lanatusArabidopsis thaliana13.8821.1291.1479forward
CNT30538793Citrullus lanatusBrassica napus13.8820.4792.4179forward
CNT30236394Citrullus lanatusBrassica oleracea14.0621.6291.2580forward
CNT3075181Citrullus lanatusBrassica juncea14.0621.9291.2580forward
CNT30261820Citrullus lanatusBrassica rapa14.0625.5691.2580forward
CNT30612531Citrullus lanatusArabis alpina14.2420.3591.3681forward
CNT30619768Citrullus lanatusCajanus cajan13.8831.692.4179forward
CNT3024638Citrullus lanatusPopulus trichocarpa15.2926.8589.6687forward
CNT3038228Citrullus lanatusCucumis melo96.6692.7584.91550forward
CNT30725207Citrullus lanatusLupinus angustifolius13.7121.6793.5978forward
CNT3050069Citrullus lanatusCucumis sativus68.8960.6888.52392forward
CNT30115210Citrullus lanatusEutrema salsugineum13.5331.390.9177forward

Expression of CNT3021538

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MHLMLIRTRFSNLRASLFRLNIIMWPLSVWLVPSEYFSCSP

>peptide 2 (67 aa)
MKIDLPHFLWFILPWTNLYVLTCFPFKICNNLYYASNAYSNSFQQFKSQFIPTEYHYVASIGLVGTF*

Sequence

>CNT3021538
CACAATAGTAAGGTTTAGCCTTTAGGGTTCTGATATGCTCTATAAATAGGAAGGCGCCTAAAAATAATCGTTCCAGTTTTTACGATTCATCGACAAACGA
GAGAGGCTGAAGGATCGAGTCCGCCATTGTTTTTCTGAGACAAAGCTTGGTCGCCATCGACAATGAGAGCTAAGTGGAAGAAGAAGCGTATGAGGAGGCT
CAAGAGAAAGCGCAGAAAGATGAGACAGAGATCTAAGTAGTTGCAGATATCAGGGAAATGATCAAGCTTTCTCCTGAGAGTACCTAATATCTCCAGTGCT
GTCCTGCATTATTTGCTTGAAGTTGTGGAGTTCGTAGTTGTTCTTATGAAGATAGATTTGCCCCATTTCCTATGGTTTATTTTACCTTGGACAAACTTAT
ATGTTCTGACTTGTTTTCCGTTTAAGATTTGTAATAACTTATATTATGCATCTAATGCTTATTCGAACTCGTTTCAGCAATTTAAGAGCCAGTTTATTCC
GACTGAATATCATTATGTGGCCTCTATCGGTTTGGTTGGTACCTTCTGAATATTTTTCTTGCAGCCCCT