Detailed information on CNT3050069


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30376000Cucumis sativusArabidopsis thaliana12.2321.1291.1479forward
CNT3021538Cucumis sativusCitrullus lanatus60.6868.8988.52392forward
CNT30542653Cucumis sativusBrassica napus12.3820.4691.2580forward
CNT30236394Cucumis sativusBrassica oleracea12.3821.6291.2580forward
CNT3075181Cucumis sativusBrassica juncea12.3821.9291.2580forward
CNT30261820Cucumis sativusBrassica rapa12.3825.5691.2580forward
CNT3038228Cucumis sativusCucumis melo87.4695.2890.97565forward
CNT30725207Cucumis sativusLupinus angustifolius12.0721.6793.5978forward
CNT30115210Cucumis sativusEutrema salsugineum11.9231.390.9177forward

Expression of CNT3050069

Peptides detected in this lncRNA

>peptide 1 (57 aa)
HSIVRFRVLISSINMNTPYFCLFLPILFIVIQRGLKDRPSAAIVVLRPSLFAIDNES*

>peptide 2 (96 aa)
MKLVLHHFLWFLLLWTNLYALTRFLLKICYNLYCASNAFSNSFQQFNSLFIQTEYHCVALLMCRLVPSKYFTCNLSLINVLSNTLVLILALVPKDE*

Sequence

>CNT3050069
ACACTCGATAGTAAGGTTTAGGGTTCTGATATCCTCTATAAATATGAATACGCCTTATTTTTGTTTGTTTCTTCCTATACTCTTCATCGTCATCCAGAGA
GGGCTGAAGGATCGACCCTCCGCTGCTATTGTTGTTCTAAGACCAAGCCTGTTCGCCATCGATAATGAGAGCTAAGTGGAAGAAGAAGCGTATGAGGAGG
CTCAAGAGAAAGCGCCGAAAGATGAGACAGAGGTCTAAGTAGTTGCAGATAACAGGAAAATGATCAAGCTTTCTCCTGAGAGTGGCTAAATACCTCCATT
GTTGTCTTGCATTATTTGCTTGAAGGTGTGGAGGTTGTAGTTTTGTTCTTATGAAGTTAGTTTTACACCATTTCCTGTGGTTTTTATTACTTTGGACAAA
CCTATATGCTCTGACTCGTTTTTTGCTTAAGATTTGCTATAACTTATATTGTGCTTCTAATGCTTTTTCGAACTCGTTTCAGCAATTTAATAGCCTTTTT
ATTCAGACTGAATATCATTGTGTTGCCCTGTTAATGTGTCGATTGGTACCTTCTAAATATTTTACCTGCAACCTATCTCTTATAAACGTATTGTCCAATA
CTCTTGTCCTTATCCTTGCACTTGTTCCAAAGGATGAGTGAACGGA