Detailed information on CNT3038228


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30376000Cucumis meloArabidopsis thaliana13.3221.1291.1479forward
CNT3021538Cucumis meloCitrullus lanatus79.682.9586.23472forward
CNT30542653Cucumis meloBrassica napus13.4920.4691.2580forward
CNT30236394Cucumis meloBrassica oleracea13.4921.6291.2580forward
CNT3075181Cucumis meloBrassica juncea13.4921.9291.2580forward
CNT30261820Cucumis meloBrassica rapa13.4925.5691.2580forward
CNT30612531Cucumis meloArabis alpina13.6620.3591.3681forward
CNT30619768Cucumis meloCajanus cajan13.3231.692.4179forward
CNT30725207Cucumis meloLupinus angustifolius13.1521.6793.5978forward
CNT3050069Cucumis meloCucumis sativus95.2887.4690.97565forward
CNT30115210Cucumis meloEutrema salsugineum12.9831.390.9177forward

Expression of CNT3038228

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MRLYLSVPFFTLHLHRQRLKDRPSSIVLLRQTLFAIDNES*

>peptide 2 (47 aa)
RVLISSINRNAPIFICSFFYTSSSSTEAEGSTVLHCSSKANPVRHRQ*

>peptide 3 (80 aa)
MKIGLHHFLWFLLLWTNLYALTRFLLKIWYNLYYAFNAFPNSFPLFNSLSIQTEYHCVALLTCRLVPSKYFTCSQSLINI*

Sequence

>CNT3038228
AGGGTTCTGATATCCTCTATAAATAGAAATGCGCCTATATTTATCTGTTCCTTTTTTTACACTTCATCTTCATCGACAGAGGCTGAAGGATCGACCGTCC
TCCATTGTTCTTCTAAGGCAAACCCTGTTCGCCATCGACAATGAGAGCTAAGTGGAAGAAGAAGCGTATGAGGAGGCTCAAGAGAAAGCGCCGAAAGATG
AGACAGAGGTCTAAGTAGTTGCAGATATCAGGAAAATGATCGAGCTTTCTCCTAAGAGTGGCTAATATCTCCATTGTTGTCTTGCATTATTTGCTTGAAG
GTGTGGAGGGTTGTAGTTTTGTTCTTATGAAGATAGGTTTACACCATTTCCTGTGGTTTTTATTACTTTGGACAAACCTATATGCGCTGACTCGTTTTCT
TCTTAAGATTTGGTATAACTTATATTATGCTTTTAATGCTTTTCCGAACTCGTTTCCGCTATTTAATAGCCTTTCTATTCAAACTGAATATCATTGTGTT
GCCTTGTTAACGTGTCGATTGGTACCTTCTAAATATTTTACTTGCAGCCAATCTCTTATTAACATATAGAATGATACACTTGTTCCGATGTTC