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Detailed information on CNT30201970


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674307Pisum sativumSetaria viridis31.812.0494.49490reverse complement
CNT30304182Pisum sativumTriticum aestivum28.6841.7483.71442reverse complement
CNT30398960Pisum sativumTriticum turgidum8.3735.8387.6129forward
CNT30232833Pisum sativumAnanas comosus26.864.5394.19413reverse complement
CNT30717224Pisum sativumMalus domestica golden8.522.0296.95131reverse complement
CNT3054162Pisum sativumAmborella trichopoda3.1122.0293.7548forward
CNT30104565Pisum sativumOryza rufipogon10.6422.3490.24164forward
CNT30333539Pisum sativumCynara cardunculus6.8128.6995.24105forward
CNT30723871Pisum sativumLupinus angustifolius31.2110.1397.71481reverse complement

Expression of CNT30201970

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MRITKLTRRSGCWHNRVVPYRTAGERAVAFVVVLQDSNVLRPSQNELAGGPLPSHS*

>peptide 2 (41 aa)
LAHLVGRGEALGISISFFGAVLFPSPRPGIALRFRFFGRIN*

>peptide 3 (30 aa)
GWRISLGVEKHWESPFLSSEPFFSRPPAPA*

>peptide 4 (60 aa)
VGASRWAWRSIGNLHFFLRSRSFPVPPPRHSASLPVLRKNQLTSPFFIDLGKRNRLPVAS*

Sequence

>CNT30201970
GGTTGGCGCATCTCGTTGGGCGTGGAGAAGCATTGGGAATCTCCATTTCTTTCTTCGGAGCCGTTCTTTTCCCGTCCCCCCGCCCCGGCATAGCGCTTCG
CTTCCGGTTCTTCGGAAGAATCAACTGACTTCTCCCTTCTTCATTGATCTGGGGAAAAGGAACCGTCTACCAGTGGCAAGCTAGACATCAAGAAGTGGCT
TGATGAGGATAACTAAGCTGACACGCCGGAGTGGCTGCTGGCACAACAGGGTGGTGCCTTACCGCACCGCAGGCGAACGCGCGGTAGCGTTCGTGGTGGT
GCTTCAGGATTCCAATGTACTGCGTCCAAGTCAGAACGAGCTTGCCGGCGGACCACTGCCGTCCCATTCTTGAGTGAGCTGGAGCGCAGCCATCTTATCC
ACTGAACTAGCTAGAAGCTATCGCTTCGGGTCGAAGCACTAAAAGAAAGGACCGGGAAACGCGGCGGCATAGGAACCACGGGACCCCCTACTAGTAAAGG
GAAAACGGAAGTGCGCGTTAGCGCACCAGCTGAAAAAGCCCATTCCCCTGACTCTAACTTCACCCCTCTCCAACCAGTCGAGTGGCATTAGCCCCTCTCC
CAGCAAGAGGACCTCCAAGTTAAGCGCGCTAGCGCGCTTTACCAAGGCTTTCTCTGATAGGGGCTCGAACGCCGTTGCTTGCTTGTTTGGGTCGAGCGTC
AACCTTAGCGCATCTGTTTTCTTGCTCCTTAGCACAAGCACTAAGTAAGCCCGTGAAGGAAAGGCCTTTTCATACATCATAATAAGGTAAGCTTCATAGC
TCCAACCTAGACAAAGCCTTTTTTTTTTTACCTTTTTTTAGATTGGGTTGCTGGATACGGGATCCTCGTAGTAGGGTGGACCAACATCCAGCCGAGAGTG
GGCAGCCTTTAGAAGCAACAAGTTGGGAAACCAATAGAACGCTTCGCGTTTTCTTATCTTCTTCCCTCCCTAGGAGTAGCACAAAAAGAGGGATTAACAT
TATTGACCCAATGATAAACCACTAACACCCTCCTCGTTGGGTCTCCGCGCACTGGGAAAAGGCTCTAGCGATGGGAAAGCGGCCACTACTAACAAAGCTC
CAATAAGGTATCGATCGAGCGAGAGGGCTATCACAGTCAGGTGCGAAGCAATTACCCCCTTTTTGTAAAGTACCCCTCTTCCTATTTAGTTTAGAGGGTT
GAGGCGAGAAATGGCTTGATGAACCGTTCCGTTCGCCATGCACCGACCCCATTCACTTGCTTATCGTAGAGGCTGTAAGTACACAGTGCCCCACAACAAT
TAAAAGTATAGTGATAGTGGGGTTGAATCACTGATCAAAAAGAATATTTTGGAGAGATTATTCATCGATCTAGTGGCCGGCGAATCACTGATCAAAGAGC
GAGCAGCCGACAGGTTTAATGATTTGGTGGGATCCACAGATGTAGTGGCCGGTGAACCGCTTCTTCTTCTTCCACGAAGATTCAGACAAAACCGAGCTTG
GATGAAACTGAACAAGATTTGGCGAACGAATACAAAGGTAA