Detailed information on CNT30232833


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674307Ananas comosusSetaria viridis65.3110.2798.33418forward
CNT30201970Ananas comosusPisum sativum64.5326.894.19413reverse complement
CNT30717224Ananas comosusMalus domestica golden20.7822.3594.74133forward
CNT30723871Ananas comosusLupinus angustifolius57.037.6995.34365forward

Expression of CNT30232833

Peptides detected in this lncRNA

>peptide 1 (33 aa)
QWIRWLRSSSLKNGTAVVRRQARSDLGRSTLES*

>peptide 2 (52 aa)
MGRQWSAGKLVLILDAVHWNPEAPPRTLPRMRLRCGVRHHPVVPAANSGVSA*

>peptide 3 (73 aa)
MSSFPTGRRFPFPQINEEGRSQLILPKNRKRSAMPGRGDGKRNCSEERYWGSQCFSTPNEMHQPRDDGARFHG*

>peptide 4 (31 aa)
MTVHDSMDNFIRDRDRGHSLRSSALIMPLGI*

Sequence

>CNT30232833
TCAGTGGATAAGATGGCTGCGCTCCAGCTCACTAAAGAATGGGACGGCAGTGGTCCGCCGGCAAGCTCGTTCTGATCTTGGACGCAGTACATTGGAATCC
TGAAGCACCACCACGAACGCTACCGCGCATGCGCCTGCGGTGTGGGGTAAGGCACCACCCTGTTGTGCCAGCAGCCAACTCCGGCGTGTCAGCTTAGTTA
TCCTCATCAAGCCACAACCTTGATGTCTAGCTTCCCAACTGGTAGACGGTTCCCTTTCCCCCAAATCAATGAAGAAGGGAGAAGTCAGTTGATTCTTCCG
AAGAACCGGAAGCGAAGCGCTATGCCGGGGCGAGGGGACGGGAAAAGAAACTGCTCCGAAGAAAGATATTGGGGTTCCCAATGCTTCTCCACGCCCAACG
AGATGCACCAACCTCGGGATGACGGTGCACGATTCCATGGATAATTTCATTCGAGATCGTGATAGAGGACATAGCTTACGATCATCGGCTTTGATCATGC
CACTAGGCATTTGATTAGGACATTGCACAATGATCCGAACACTTTGTCGCATCTCTTCGATACGGATACAGTAACGATCATAGCGATCTCCTCTGGTACC
TACTGGTACGTCAGGATCCGATTGGTCATGAACATCGTAA