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Detailed information on CNT30398960


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30670887Triticum turgidumSetaria viridis44.1768.8395.6159reverse complement
CNT30201970Triticum turgidumPisum sativum35.838.3787.6129forward
CNT30502310Triticum turgidumNicotiana attenuata36.3913.4887.79131forward
CNT30226764Triticum turgidumHordeum vulgare29.4436.43100106reverse complement
CNT30233011Triticum turgidumAnanas comosus25.563.3893.4892forward

Expression of CNT30398960

Peptides detected in this lncRNA

>peptide 1 (75 aa)
RFNDFVGSLDVAAGEPLLLPQRFRQNRAWIELKKIWRTKKKVKGFIIKKIKGGYSVAIAGFTTFLPFKKALVKKG*

Sequence

>CNT30398960
CCAGGTTTAATGATTTTGTGGGATCCCTGGATGTAGCGGCTGGCGAACCGCTTCTTCTTCCACAAAGATTCAGACAAAACCGAGCTTGGATAGAACTGAA
GAAGATTTGGCGAACGAAGAAAAAGGTCAAAGGGTTTATTATAAAAAAAATCAAAGGAGGTTATTCAGTAGCCATCGCGGGTTTCACTACTTTTCTTCCA
TTCAAAAAAGCTCTTGTAAAAAAAGGATAGCGAATGATCGATTCACCATTGATAGCATTAACCCTAAAAGGAGGGATATTGTGATAATAGCGGCAGATCA
AACAAGAACTTGATGAAAAGATAGAAAAAAATTATGAAAAATCCGAAGCCCACCTTAATC