Detailed information on CNT3054162


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30201970Amborella trichopodaPisum sativum22.023.1193.7548forward
CNT30502310Amborella trichopodaNicotiana attenuata31.657.186.9669forward
CNT30724464Amborella trichopodaLupinus angustifolius44.0422.8689.5896forward
CNT3050527Amborella trichopodaCucumis sativus26.619.6891.3858forward

Expression of CNT3054162

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MQDELTRVPINRAARFENKVRSTYVVAGEPLLLL

>peptide 2 (34 aa)
LMVIWRRGKLLDFWGQLEGFLVYFRIKKVNQIYS*

Sequence

>CNT3054162
TTTGATGGTCATATGGAGGCGAGGAAAGCTCTTGGATTTCTGGGGCCAGCTTGAGGGTTTTTTAGTCTATTTTCGTATAAAAAAAGTAAATCAAATTTAC
TCCTAATAATTTGTATGCAAGATGAGCTTACAAGAGTGCCAATCAACCGAGCCGCCAGGTTTGAGAATAAGGTGCGATCCACATATGTAGTGGCTGGTGA
ACCGCTTCTTCTTCTTCC