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Detailed information on CNT3019442


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 2e-102

BLAST vs NONCODE:
NONTPRT002153, E-value = 2e-68

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30201344Citrullus lanatusPisum sativum54.7242.1886.42464forward
CNT30608663Citrullus lanatusGossypium raimondii53.8958.9785.34457forward
CNT3036185Citrullus lanatusCucumis melo52.3643.2394.37444forward
CNT30174752Citrullus lanatusVigna angularis54.670.2686.39463forward
CNT3050944Citrullus lanatusCucumis sativus77.4868.0889.04657forward

Expression of CNT3019442

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MVSELSTSRVMVLPVNVLTKICIPPRRRNTRWRVDSFWML*

>peptide 2 (81 aa)
TMHHSDLHFIRKVQIQIKKNTTFWEINFIQQQLIGPTGSCYQVPIFNPLTSRKDSKRMSKTQPNTHHHLKTTTKTQDEVKG*

>peptide 3 (31 aa)
MVSDDSTSRVMVLPVRVLTKICICKRRKRRN*

Sequence

>CNT3019442
ACAATGCACCATTCGGATCTTCATTTCATTAGAAAAGTACAAATACAAATAAAGAAAAACACAACATTCTGGGAAATCAATTTTATTCAACAGCAATTAA
TAGGGCCTACAGGCAGCTGTTACCAAGTACCAATCTTCAACCCATTAACATCCAGAAAGGATTCAAAGAGAATGTCCAAGACCCAACCAAACACCCACCA
CCATCTAAAAACCACCACGAAGACGCAGGACGAGGTGAAGGGTTGACTCCTTCTGGATGTTATAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCC
AGCGAAGATCAACCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTGGATCTTAGCCTTAACGTTGTCAATGGTGTCCGAACTCTCAACCTCTAGGGTG
ATGGTCTTGCCGGTCAATGTCTTGACGAAAATCTGCATACCACCACGAAGACGCAACACAAGGTGGAGGGTTGATTCCTTTTGGATGTTGTAGTCGGCCA
ACGTACGGCCATCCTCGAGTTGCTTTCCGGCGAAAATGAGACGTTGCTGATCTGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGAT
GGTATCAGACGACTCAACCTCAAGGGTGATGGTCTTGCCAGTTAGGGTTTTAACGAAGATTTGCATCTGCAAGAGAAGGAAAAGAAGAAATTAAGAACTC
CGATCCCTAAAATCACAAGAATCTTACCGTAGATCCAATCCATGCGAAAATAAAAACCCTATATCGGAACCCTAAAACATCCCAATCCAACAAGTACCAT
ACAATTCAGAAACTCGGATCGGGAGATAACAAAAATTGACAAAGCAAT