CANTATAdb - search

Detailed information on CNT3036185

BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 4e-128

BLAST vs NONCODE:
NONTPRT002153, E-value = 1e-82

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT3019442	Cucumis melo	Citrullus lanatus	43.23	52.36	94.37	444	forward
CNT30201348	Cucumis melo	Pisum sativum	44.69	42.23	86.06	459	forward
CNT30356895	Cucumis melo	Lactuca sativa	47.81	51.58	85.95	491	forward
CNT30574249	Cucumis melo	Vitis vinifera	55.4	57.24	83.3	569	forward
CNT30334097	Cucumis melo	Cynara cardunculus	55.4	51.77	84.36	569	forward
CNT3050869	Cucumis melo	Cucumis sativus	53.75	74.29	97.64	552	forward

Expression of CNT3036185

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MVSELSTSRVMVFPVNVLTKICIPPRRRNTRWRVDSFWML*

>peptide 2 (78 aa)
FISFREISNIHINKNINISGNQLYSTAIIGLQAAVSKYQIFNTLTFRNHSKTITNTQQHPPPSKIHHGDAGQGMPSLS*

>peptide 3 (30 aa)
MVFPVKVLTKICIPPRRRSTKCKVDSFWML*

>peptide 4 (28 aa)
MKLKEQKPKEKKKAKKSERKKKDKRRTNL

Sequence

>CNT3036185
TTCATTTCATTTAGAGAAATAAGCAACATTCACATAAACAAAAACATAAACATTTCGGGAAATCAACTTTATTCAACAGCAATAATAGGCCTACAGGCAG
CTGTTTCCAAGTACCAAATCTTCAACACATTAACATTCAGAAATCATTCAAAGACAATCACCAACACCCAACAACATCCACCACCATCTAAAATCCACCA
CGGAGACGCAGGACAAGGGATGCCTTCCTTGTCCTGAATTTTAGCTTTCACATTATCGATCGTGTCGGAGCTCTCCACCTCCAAGGTGATGGTCTTTCCG
GTCAAGGTCTTAACAAAAATCTGCATTCCACCCCGGAGACGAAGCACCAAATGCAAGGTTGACTCCTTCTGGATGTTGTAGTCAGCCAGAGTCCTTCCAT
CTTCAAGCTGCTTTCCAGCGAAGATCAACCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTGGATCTTAGCCTTGACGTTGTCGATGGTGTCAGAGCT
CTCAACCTCTAGGGTGATGGTCTTTCCGGTCAACGTCTTGACGAAAATCTGCATACCACCACGAAGACGCAACACAAGGTGGAGGGTGGACTCCTTCTGG
ATGTTGTAGTCGGCCAAGGTACGGCCATCCTCGAGTTGTTTACCGGCGAAGATGAGACGTTGCTGATCCGGGGGAATCCCTTCCTTGTCCTGGATCTTGG
CCTTGACGTTGTCGATCGTATCAGACGACTCAACCTCAAGGGTGATTGTCTTACCGGTTAGGGTTTTAACGAAGATTTGCATCTGCCAGATAAGAAAAAG
GAAAAAAAAAAAAACAAATAAGAACTCCTTTCTCCAAAATCACAATAGCCCTTAAGTAGGATAAGAAATAAAACCTAAATCGAAACCCTAAAACATCTCA
ATTCAACAAATACCACATACCATATAACAAAAAGAAACGAATGAAATTAAAAGAACAAAAACCGAAAGAAAAGAAAAAAGCGAAAAAAAGTGAAAGAAAG
AAGAAAGATAAAAGGAGGACGAACCTT