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Detailed information on CNT30174752


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 2e-105

BLAST vs NONCODE:
NONTPRT002153, E-value = 2e-80

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3019442Vigna angularisCitrullus lanatus70.2654.686.39463forward

Expression of CNT30174752

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MVSELSTSRVMVLPVRVFTKICMPPRRRRTR*

>peptide 2 (61 aa)
MRRCWSGGIPSLSWILAFTLSIVSELSTSRVMVFPVRVLTKICMPPRRRRTRELRKENELVC

>peptide 3 (36 aa)
IYLKFHYNKGTIQSNTNQIYLRVNKDPIHSPILKMS*

Sequence

>CNT30174752
ATATATCTAAAGTTTCATTATAACAAAGGGACAATACAGTCCAACACAAACCAAATTTATTTAAGGGTCAATAAAGACCCAATCCACAGTCCGATTTTGA
AGATGTCTTGAAAGCAGTAAAAAACAGAGGTCAGCACAGTCTAAAAGCCCCCACGAAGACGCAGAACAAGGTGAAGGGTGGATTCCTTCTGAATGTTGTA
ATCAGCAAGGGTCCTTCCATCCTCCAGCTGTTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTGACG
TTGTCGATGGTGTCAGAGCTCTCAACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTCACAAAGATCTGCATGCCACCGCGGAGACGGAGAACAAGGT
GAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGTCCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGTTGCTGGTCAGGGGGAATTCC
TTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCAATAGTATCGGAGCTCTCGACCTCGAGAGTGATGGTCTTTCCGGTAAGGGTCTTAACGAAGATCTGC
ATGCCACCGCGGAGACGGAGAACTAGGGAACTGCGCAAAGAGAATGAGCTAGTTTGTTT