CANTATAdb - search

Detailed information on CNT30201344

BLAST search results

BLAST vs Swiss-Prot:
sp|P0CG83|UBIQP_HORVU, E-value = 4e-75

BLAST vs NONCODE:
NONMTRT002043, E-value = 9e-53

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT3019442	Pisum sativum	Citrullus lanatus	42.18	54.72	86.42	464	forward

Expression of CNT30201344

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MVSELSTSRVMVFPVRVFTNICIWKIGINRYKLIRIKTS*

>peptide 2 (31 aa)
MVSELSTSRVIVLPVRVLTKICIPPRRRNTR*

>peptide 3 (61 aa)
MITVHKIEFILGGLNIGPKKIISSQLPFQNNQDHKHNITQTAQNPPRRRSTRWRVDSFWIL*

>peptide 4 (48 aa)
MEGRLLLDIVIRKSPSIFQLLTGKDQPLLVRWDSFLVLDLGLDVVNGV*

Sequence

>CNT30201344
TAAACCTTTCATGAACTCAGCATATATATACAAATTATAAGTAGTTATCATTACTAGAGTATATAATCTTGACTAAATAACAACCACATATCATATAATA
GCATAAAATAAAAACACAACACACCCATTACCCATTAGACACATCATTACAAAGGCAAAATACTAATTATTCACAACCATATGATAACAGTACATAAAAT
CGAATTTATTCTAGGGGGCCTCAATATAGGACCCAAAAAGATCATCAGTTCACAACTTCCATTTCAAAATAACCAAGATCACAAACACAACATAACACAA
ACAGCTCAAAACCCACCACGAAGACGGAGCACAAGATGGAGGGTAGACTCCTTCTGGATATTGTAATCCGCAAGAGTCCTTCCATCTTCCAACTGCTTAC
CGGCAAAGATCAACCTCTGCTGGTCAGGTGGGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCAATGGTGTCTGAGCTCTCCACCTCAAGGGT
AATAGTTTTACCAGTAAGAGTCTTGACGAAAATTTGCATACCACCACGAAGACGCAACACAAGGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCAGCG
AGGAGTACGGCCGTCCTCAAGTTGCTTTCCGGCGAAGATCAGACGTTGCTGGTCCGGGGGAATTCCTTCCTTATCCTGGATCTTAGCTTTGACGTTATCG
ATGGTGTCGGAACTCTCAACCTCGAGAGTGATGGTCTTTCCGGTGAGGGTTTTCACGAATATTTGCATCTGGAAAATCGGAATCAACAGATACAAATTAA
TCAGAATTAAAACATCATAACAAACGGATCTGAAGAATTACGTAATAACGCTATTAATTTCGTTCATACAAAGCTAAAATTTGAATTGAATTCACTACAC
CTTAACAAAAAAAAAGCTTTTAACAATCGGATCTAAAGAGATCCAAGAGAAACGAACAATTGATTGTTAATTCATCAAATTAGGATCAGATCAGAGAGAA
ACTCATGAACAATTAAGCAATTACAAATCCTACAAGATCGATTTTTGAAAGATCTACGATATTTAGAAGCGAAAAGAAAATCAATAGAGAAAATCAAATA